Cluster no. 194

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Cluster is part of supercluster: 136

Cluster characteristics:

size 159
size_real 159
ecount 203
supercluster 136
annotations_summary 94.34% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
4.40% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.63% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
pair_completeness 0.0816326530612245
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00628930817610063
satellite_probability 4.69086409232228e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 45
S1 55
S3 59
comparative analysis - number of edges between species:
S2 S1 S3
S2 15 16.0 22.0
S1 16 30.0 27.5
S3 22 27.5 27.0
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.080 0.834 1.100
S1 0.834 1.130 0.993
S3 1.100 0.993 0.937

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
CRM Ty3-INT CRM Ty3-INT 1 0.0063
Reina Ty3-INT Reina Ty3-INT 7 0.0440
Tekay Ty3-INT Tekay Ty3-INT 150 0.9434

clusters connected through mates:

Cluster Number of shared
read pairs		 k
218 17 0.144
254 11 0.107
311 5 0.0508
7510 2 0.0288
9150 2 0.029
25 1 0.00107
203 1 0.0109
267 1 0.01
497 1 0.0121
6850 1 0.0144
11600 1 0.0145
50100 1 0.0146
51100 1 0.0146

CL194 ----> CL218

image

No. of shared pairs: :17

CL194 ----> CL254

image

No. of shared pairs: :11