Cluster no. 147

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Cluster is part of supercluster: 90

Cluster characteristics:

size 300
size_real 300
ecount 1641
supercluster 90
annotations_summary
pair_completeness 0.840490797546012
pbs_score 0.258096
TR_score 0.7859848484848485
TR_monomer_length 2500.0
loop_index 0.916666666666667
satellite_probability 0.411494921649585
consensus 
TTCTAGGTCTTTTGTACATTGTTCATTCATCGCATGTGCATTTACCACTGGATGATTCCACTTCTTTTGTTCGTCATAAT
TTGTCGGATGGTGCCACTTACTCTTTTCATCAACGATTGTTGGATGATGCCACTTGGTTGGTAGTTCATTAGGTTGCAGC
TTTGATGCCAAGGTAGTTTCAGTTATGATAAAAAAGAACAACACTAAAGCTAATGATGCACTATATGCTTTGGTCATGTT
TATGTGTGGTATGTTGTTCAAGAAAGAAGATGGTTTTTATAAGATTTGAAGATAAAGTTTGGAATCTTGAAGTCAATTAA
GCCATTGTAAAATAATTAATGATCTCATTTTGTTTTATCCACTTTCATATTCTGGATAAAAACATAACCTTAAAGTAGAT
AGTGTTTTAATAAGCTTTCTACAAAAAAATAACATGCAAAAGTTAATTATAATTCACCAATCGTTATGTTAATAATAGAA
GGCGGTGTTGCATATCAACTACTAATTTCAATCTAAGCTTCTTGTATCATAGGAAATATATGAAAAACCCAAATTAGTAA
AAAAAAATTAAATAAATATTGGTGTCTACTAAATTATAATAAAAATGTGTGATTGCCGATACATCCAAAAAGAAAAGTCA
AAACAGGTAGTTACGATGTAAACTGAAATGAAAAATTCTAGAATAAAAAATAGATGTCTCGTTTTGTCATATATTTTATC
CTCCTAATTTTTTTGATAATATTAGTATTGTTATCGTAACAGTATATTACTACACTATTAGCGTGTATGTGTGCAAATGT
GTATATTCGCATATTTCGATTAAAATTTACTATATTTTGATTATAAAAGACGTTTATTTTCTTGTTATGGTGTTTGGAAC
TTACACAATATCAAATGTCTATTTTTTATTTTACCACCTCAAATGTAGGTTTATCGTTTCACATCTCGTTTTCACTAAAA
CTTAAAGTTAATTGCTCGACGTCATGTATTCGCATTACTATTTAACTGTATTAAAAACCCAAGTCTAGTGTTACCAAAAA
AGAGATATTTGTATAACTCTATGGCATGCAAAAAATTTGTAGTTTGAAATGTATCCACAATTTGATTTTTATTTACATTT
TGCATAGATATAACATATTGTCAATATGTCGTTAAAACTGAAGATTTTAGTGTGGTGAAAATTAGACGCTTCTGATATAC
TAGTGTCCAAAGCCAGTCAGATATTGTTGTAGGCTTAAGGCATAATGATCTAAATCAGGGATTAAAACAATCAGAGGTCC
TTATTAGTTATTTTGAAACATTGAAAATACAGTCACAATGCAAGTTTAAATTATAGTGGCTTAAAAATAAAGCATACTCT
TTTACAATTACACAGAGTACGCTTTCATTAATCTAAAATATGACCGATTTCATTTATAAACAAAATACAATTACTTTTAT
AAACAAAATTAGAATTTTGAGGCCGATGAAAATTCAAGGCCCTTGGCGATGACTTTAGTGACATAGGGCTACTATCGGCC
ATTCCTATATCAAACATAGTTTCGAATAATACCGACTATTTGTAAATAGCAGTAAATGAGATTTGAGAAGAAATGTGTAG
ATGACTATTAAAATAAGTAACGTGCAACGAACCATCCATTTGAGAATTTGCATATGCAAAATGATTTTTAAATAACAATT
TAATAACATAATTTTTTCTAAAAAATCCATCATTCAAAAGTTTTGCATTTTGCAAGTTTATCCAACTCTAACCATCCACT
ACTAGTGTTGCAATAAATTACTATTTTGAAAAATTTTGGTTAAAAATTTGAAAATAAGAATACACAAAAATCCAAACTTC
CTACCTATATTAAACTGGAAAAGTGAATACATAGCTTAAAATAAGTTGTATAATAACAAAACAAAACATGTTTGTAACTA
TTGATCACACATCTTATTAGAAAACAATATATTTGGTTTAAGTAAAGCAGTTTTATTGGAAAATAAATTATATAAGCTTC
CTTTACTAAAATTTACTTAAATTGAGAGGTATGTATAAATTTATTAAATTTATGGAAAAACATTTAGTTTATAAATATAA
ATATCGTGGCAATACATTTATGTAAAAAGTTAATCCGAATTATGCTGACCAAACATAAATATTATCTCAATATATAAACA
TAAGTGAAATAATAGCTCCACGAATAGATTACTATCAGAAGATGTAATAATAAGTTGTAAAATGCTTTTTAAGATATTTA
ACTTAAACCATCTACAAAGATAATTCTTCCATCAAATTTATTTCATACTATAATACCATGAAAGCACATTGTATCAACTT
TAATGACTTAACATTTGATGTTAAACATTATCATTTCACCGGTGAAATAGTTGAAGCTTGATTATGCCATTTTCTTTGTT
GATACAACGATGTAGGACGATGTCATTTACTTTCTTCATAACTGGTTATTGGATGATGCATTTCTTCTTGTTCTTTTGTG
CACTGTAGTTCTTTTGTGCA

  

  

    TAREAN_annotation
    Putative satellite (low confidence)
  

  

    orientation_score
    1
  

 


 
 comparative analysis:


  





 
 Comparative analysis - species read counts:



  

    Species
    Read count
  

   

    S2
    114
  

  

    S1
    101
  

  

    S3
     85
  

 


 
 comparative analysis - number of edges between species:



  

    
    S2
    S1
    S3
  

   

    S2
    239
    207
    184
  

  

    S1
    207
    186
    150
  

  

    S3
    184
    150
    133
  

 


 
 comparative analysis - observed/expected number of edges between species



  

    
    S2
    S1
    S3
  

   

    S2
    0.988
    0.992
    1.030
  

  

    S1
    0.992
    1.030
    0.972
  

  

    S3
    1.030
    0.972
    0.999
  

 


 
 protein domains:



No protein domains detected



protein domains:


  





 
 Reads annotation summary



No similarity hits to repeat databases found


 
 clusters with similarity:



  

    
      



 

    Cluster
    Number of similarity hits
  

      

   		
 

 

   
     

       



  

    74
    1
  

  

    80
    1
  

       

     

  		
 




 
 clusters connected through mates:



  

    
      




 

    Cluster
    Number of shared
 read pairs		
    k
  

      

   		
 

 

   
     

       




  

    42
    2
    0.00195
  

  

    8
    1
    0.00171
  

  

    9
    1
    0.000807
  

  

    12
    1
    0.000583
  

  

    13
    1
    7e-04
  

  

    22
    1
    0.00101
  

  

    28
    1
    0.000781
  

  

    29
    1
    0.00109
  

  

    33
    1
    0.00114
  

  

    37
    1
    0.000884
  

  

    48
    1
    0.0019
  

  

    56
    1
    0.00104
  

  

    80
    1
    0.00132
  

  

    86
    1
    0.00482
  

  

    2980
    1
    0.0714
  

  

    13100
    1
    0.069
  

  

    20800
    1
    0.0714
  

  

    22900
    1
    0.0714