Cluster no. 66

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Cluster is part of supercluster: 26

Cluster characteristics:

size 3092
size_real 3092
ecount 21247
supercluster 26
annotations_summary 21.64% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
0.03% Class_I/LINE:LINE-ENDO
pair_completeness 0.735129068462402
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000323415265200517
satellite_probability 8.20691448488047e-23
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 989
S1 1020
S3 1080
comparative analysis - number of edges between species:
S2 S1 S3
S2 2220 2300 2360
S1 2300 2250 2380
S3 2360 2380 2700
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.995 1.020 0.982
S1 1.020 0.997 0.980
S3 0.982 0.980 1.040

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
EnSpm_CACTA CACTA-TPase EnSpm_CACTA CACTA-TPase 669 0.21636
LINE LINE-ENDO LINE LINE-ENDO 1 0.00032
CRM Ty3-GAG CRM Ty3-GAG 1 0.00032

clusters connected through mates:

Cluster Number of shared
read pairs		 k
847 10 0.041
655 6 0.0247
1200 6 0.0251
1190 5 0.021
2940 5 0.0209
3310 5 0.0209
4 4 0.0016
213 4 0.0164
405 4 0.0167
1880 4 0.0166
2920 4 0.0168
6670 4 0.0168
820 3 0.0122
1390 3 0.0124
1630 3 0.0125
2620 3 0.0126
3530 3 0.0126
6740 3 0.0126
10800 3 0.0126
1 2 0.000894
9 2 0.00137
432 2 0.00835
3510 2 0.00837
5720 2 0.0084
9980 2 0.00842
12000 2 0.00842
19200 2 0.00844
24500 2 0.00844
25000 2 0.00844
26300 2 0.00844
29400 2 0.00844
32300 2 0.00844
51400 2 0.00844
3 1 0.000561
13 1 0.000606
14 1 0.000511
16 1 0.000529
18 1 0.000477
24 1 0.000746
26 1 0.000712
30 1 0.000758
40 1 0.00117
48 1 0.00134
55 1 0.00183
64 1 0.00184
67 1 0.00164
71 1 0.00201
81 1 0.00282
150 1 0.00373
155 1 0.00309
212 1 0.00347
231 1 0.0037
233 1 0.00362
287 1 0.00393
739 1 0.00418
745 1 0.0041
1160 1 0.00412
1520 1 0.00414
1520 1 0.00414
1900 1 0.00419
2750 1 0.00419
2790 1 0.00419
3090 1 0.0042
3370 1 0.0042
3840 1 0.00419
4060 1 0.00421
4380 1 0.00419
4920 1 0.00419
5270 1 0.0042
5690 1 0.0042
5830 1 0.0042
6660 1 0.0042
6960 1 0.0042
7050 1 0.0042
7400 1 0.00422
8220 1 0.00421
8760 1 0.00423
9410 1 0.00423
10600 1 0.00421
11200 1 0.00423
11300 1 0.00421
11800 1 0.00421
13000 1 0.00421
13700 1 0.00421
14300 1 0.00421
15000 1 0.00422
17300 1 0.00422
22400 1 0.00422
22700 1 0.00422
31100 1 0.00422
32400 1 0.00422
33900 1 0.00422
35400 1 0.00422
36600 1 0.00422
44700 1 0.00422
46800 1 0.00422
47000 1 0.00422

CL66 ----> CL847

image

No. of shared pairs: :10