Cluster no. 64

Cluster no. 64

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Cluster is part of supercluster: 18

Cluster characteristics:

size	3151
size_real	3151
ecount	41336
supercluster	18
annotations_summary	2.92% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG 1.84% Class_I/LTR/Ty1_copia/SIRE:Ty1-PROT 0.22% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT 0.03% organelle/plastid 0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-GAG 0.03% Class_I/LTR/Ty1_copia/Tork:Ty1-RH 0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
pair_completeness	0.674282678002125
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00126943827356395
satellite_probability	2.69560262167269e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	1040
S1	1020
S3	1090

comparative analysis - number of edges between species:

	S2	S1	S3
S2	4590	4260	4880
S1	4260	4090	4540
S3	4880	4540	5300

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	1.010	0.995	0.998
S1	0.995	1.020	0.989
S3	0.998	0.989	1.010

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 1 0.00032

SIRE Ty1-GAG SIRE Ty1-GAG 92 0.02920

Ivana Ty1-PROT Ivana Ty1-PROT 7 0.00222

SIRE Ty1-PROT SIRE Ty1-PROT 58 0.01841

Ale Ty1-RH Ale Ty1-RH 1 0.00032

Tork Ty1-RH Tork Ty1-RH 1 0.00032

TatII Ty3-GAG TatII Ty3-GAG 1 0.00032

clusters with similarity:

Cluster	Number of similarity hits

51	69
93	13

clusters connected through mates:

Cluster	Number of shared read pairs	k

93	113	0.208
51	25	0.039
231	14	0.0411
598	10	0.0316
621	6	0.0189
806	5	0.016
822	5	0.016
9	4	0.00261
1590	4	0.0129
4	3	0.00117
5	3	0.00122
7	3	0.00122
1030	3	0.00965
3640	3	0.00969
6	2	0.00115
11	2	0.0013
16	2	0.00102
19	2	0.00324
23	2	0.00183
36	2	0.0025
48	2	0.00244
70	2	0.00324
173	2	0.00584
187	2	0.00612
785	2	0.00641
928	2	0.0064
1240	2	0.00645
1920	2	0.00645
1920	2	0.00645
2690	2	0.00649
3180	2	0.00646
5830	2	0.00648
6670	2	0.0065
8830	2	0.00649
10900	2	0.00649
12500	2	0.00649
13700	2	0.00649
15000	2	0.0065
15400	2	0.0065
22300	2	0.0065
24200	2	0.0065
32700	2	0.0065
34800	2	0.0065
44000	2	0.0065
44600	2	0.0065
46600	2	0.0065
51000	2	0.0065
1	1	0.000433
2	1	0.000401
8	1	0.00114
10	1	0.000649
13	1	0.000581
14	1	0.000493
15	1	0.0016
17	1	0.000655
20	1	0.00172
21	1	0.00091
24	1	0.000709
25	1	0.000853
28	1	0.000636
38	1	0.000805
39	1	0.000739
40	1	0.00108
41	1	0.0021
44	1	0.000888
49	1	0.00114
50	1	0.00111
53	1	0.00135
58	1	0.00157
60	1	0.00139
66	1	0.00184
67	1	0.00147
68	1	0.00107
73	1	0.00136
77	1	0.00213
78	1	0.00207
89	1	0.00186
90	1	0.00141
96	1	0.00166
118	1	0.0025
123	1	0.00238
131	1	0.00216
149	1	0.00298
205	1	0.00307
212	1	0.00279
395	1	0.00318
448	1	0.0031
460	1	0.00311
580	1	0.00318
703	1	0.00322
1020	1	0.00321
1490	1	0.00325
1720	1	0.00321
2250	1	0.00323
2440	1	0.00323
3870	1	0.00326
4600	1	0.00324
5020	1	0.00324
5030	1	0.00325
6450	1	0.00324
8260	1	0.00325
8410	1	0.00325
9020	1	0.00325
9420	1	0.00326
10400	1	0.00326
10400	1	0.00325
11300	1	0.00325
11800	1	0.00326
11800	1	0.00325
12000	1	0.00325
13900	1	0.00325
14200	1	0.00325
16600	1	0.00325
22200	1	0.00325
23800	1	0.00325
24000	1	0.00325
29400	1	0.00325
34400	1	0.00325
35300	1	0.00325
35900	1	0.00325
36900	1	0.00325
42300	1	0.00325
43200	1	0.00325
44100	1	0.00325
48500	1	0.00325
52300	1	0.00325

CL64 ----> CL93

No. of shared pairs: :113

CL64 ----> CL51

No. of shared pairs: :25

CL64 ----> CL231

No. of shared pairs: :14

CL64 ----> CL598

No. of shared pairs: :10