Cluster no. 62

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Cluster is part of supercluster: 25

Cluster characteristics:

size 3243
size_real 3243
ecount 282545
supercluster 25
annotations_summary 0.09% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.03% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
pair_completeness 0.939593301435407
pbs_score 0.0
TR_score 0.5403380130960802
TR_monomer_length 750.0
loop_index 0.966389145852606
satellite_probability 0.821132344888225
consensus 
TCTTCTAGGTTTACATCGATTTAGTCCGACTATTTATACCACAAACTCCGTGGAATAAATTTATGAACGAAAACATCCGA
GCTGTAGAAAAAACTTAAGATGGAATTATTCTGCACACAAAACCGATCCATGACAATTCGAACCGTTAGAAACGTAGAAC
ATGGAAAGAGCTTCGTTTTGATAGGTTGTGGCTCCCGTAACTCCAAACGAGTCAAAAGTTATGGCCGTTTGAAGAAACGG
AAGAAAGCGACGGACCGCTCGCTGATCCGATTCGACGGTATTGGCGAAAGTCTTCGATCTCCGCGAAACGCTCGAGCATG
CTCACACTGTAGCACTCGATATTAAAGATATTATGGATCACCGAGGGAATAAATGAGGATATGGGTCAAAAGCTTGTCTA
CTGAAGCTATAGCGCAATAAATGTTCTTTTTTTACGACCGTTCCGTCTTCCTCGTTTTCCGTACCTCATTGTTTTGCTCA
TATTCATCAACACGCGCGGTCTTTTTACCAATATTACAACATCACGACAAAGTGACTTCGAGGAGAATGTTAAACGCATT
TGATACCTTAGAATTTCGAACGGCTGAGGGTGTTTTATATGATTACTTAGCCTGTAAGTAACCTACTTTTTCAGTCTGCG
AATATCTTTCGGTTTCCTGTTTTATCCAATTTTAAATCCAATTTCAATCTTTTTAGCGGAATATTATCGTGGCCTTTTTT
GATCTTCGTATATTTTTGTTTTTTTGTCGT

  

  

    TAREAN_annotation
    Putative satellite (high confidence)
  

  

    orientation_score
    1
  

 


 
 comparative analysis:


  





 
 Comparative analysis - species read counts:



  

    Species
    Read count
  

   

    S2
    1000
  

  

    S1
    1080
  

  

    S3
    1160
  

 


 
 comparative analysis - number of edges between species:



  

    
    S2
    S1
    S3
  

   

    S2
    26700
    29300
    31000
  

  

    S1
    29300
    31600
    33800
  

  

    S3
    31000
    33800
    35800
  

 


 
 comparative analysis - observed/expected number of edges between species



  

    
    S2
    S1
    S3
  

   

    S2
    0.995
    1.000
    1.000
  

  

    S1
    1.000
    0.994
    1.000
  

  

    S3
    1.000
    1.000
    0.999
  

 


 
 protein domains:



protein domains:


  





 
 Reads annotation summary










	

	 
	
 
		   
		cl_string  
		domain  
		Freq  
		proportion 
	
 

 
Ale Ty1-INT

Ale

Ty1-INT

3

0.00093


 

 
SIRE Ty1-INT

SIRE

Ty1-INT

1

0.00031


 
	


 

 


 
 clusters connected through mates:



  

    
      




 

    Cluster
    Number of shared
 read pairs		
    k
  

      

   		
 

 

   
     

       




  

    37
    4
    0.00342
  

  

    16
    2
    0.00117
  

  

    67
    2
    0.00473
  

  

    32000
    2
    0.0388
  

  

    2
    1
    0.000447
  

  

    9
    1
    0.000784
  

  

    13
    1
    0.000682
  

  

    15
    1
    0.0027
  

  

    25
    1
    0.00109
  

  

    38
    1
    0.00101
  

  

    39
    1
    0.000912
  

  

    46
    1
    0.00158
  

  

    73
    1
    0.00209
  

  

    75
    1
    0.00211
  

  

    76
    1
    0.00232
  

  

    80
    1
    0.00126
  

  

    81
    1
    0.0059
  

  

    85
    1
    0.00416
  

  

    105
    1
    0.00457
  

  

    126
    1
    0.00966
  

  

    4000
    1
    0.0189