Cluster no. 114

Cluster no. 114

Go back to cluster table

Cluster is part of supercluster: 58

Cluster characteristics:

size	676
size_real	676
ecount	5222
supercluster	58
annotations_summary
pair_completeness	0.0816
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0014792899408284
satellite_probability	1.45904992003608e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	205
S1	245
S3	226

comparative analysis - number of edges between species:

	S2	S1	S3
S2	488	584	538
S1	584	658	626
S3	538	626	580

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	0.983	1.010	1.000
S1	1.010	0.984	1.000
S3	1.000	1.000	0.996

protein domains:

No protein domains detected

protein domains:

Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster	Number of similarity hits

4	280
70	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

4	195	0.0766
80	45	0.0436
32	2	0.00141
74	2	0.00161
29900	2	0.00694
42000	2	0.00694
10	1	0.000657
11	1	0.000657
38	1	0.000818
56	1	0.000807
69	1	0.00179
75	1	0.00141
96	1	0.00172
105	1	0.0022
191	1	0.00284
632	1	0.00342
1540	1	0.00342
3400	1	0.00345
3850	1	0.00347
4190	1	0.00345
5680	1	0.00347
6100	1	0.00346
8310	1	0.00348
8750	1	0.00348
8980	1	0.00348
12200	1	0.00347
13800	1	0.00348
15600	1	0.00347
17200	1	0.00347
18400	1	0.00347
21800	1	0.00347
26700	1	0.00347
32200	1	0.00347
36400	1	0.00347
36500	1	0.00347
39100	1	0.00347
50400	1	0.00347

CL114 ----> CL4

No. of shared pairs: :195

CL114 ----> CL80

No. of shared pairs: :45