Cluster no. 122

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Cluster is part of supercluster: 66

Cluster characteristics:

size 532
size_real 532
ecount 1594
supercluster 66
annotations_summary 0.19% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
0.19% Class_I/LTR/Ty1_copia/Ale:Ty1-GAG
pair_completeness 0.617021276595745
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0018796992481203
satellite_probability 5.75854876097884e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 181
S1 168
S3 183
comparative analysis - number of edges between species:
S2 S1 S3
S2 184 190 168
S1 190 177 169
S3 168 169 179
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.998 1.040 0.958
S1 1.040 0.982 0.974
S3 0.958 0.974 1.070

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ale Ty1-GAG Ale Ty1-GAG 1 0.0019
CRM Ty3-GAG CRM Ty3-GAG 1 0.0019

clusters with similarity:

Cluster Number of similarity hits
47 2

clusters connected through mates:

Cluster Number of shared
read pairs		 k
57 20 0.0618
47 19 0.0549
329 16 0.198
2690 4 0.0602
2880 4 0.0602
1310 3 0.0448
2760 3 0.0465
855 2 0.0296
1440 2 0.0296
1550 2 0.0305
2200 2 0.0303
5640 2 0.0312
5960 2 0.0312
13800 2 0.031
80 1 0.00124
807 1 0.0149
6980 1 0.0156
8390 1 0.0155
18100 1 0.0156
21900 1 0.0156

CL122 ----> CL57

image

No. of shared pairs: :20

CL122 ----> CL47

image

No. of shared pairs: :19

CL122 ----> CL329

image

No. of shared pairs: :16