Cluster no. 152

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Cluster is part of supercluster: 95

Cluster characteristics:

size 250
size_real 250
ecount 843
supercluster 95
annotations_summary
pair_completeness 0.461988304093567
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.012
satellite_probability 9.01795932205422e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 80
S1 83
S3 87
comparative analysis - number of edges between species:
S2 S1 S3
S2 88.0 79.5 93
S1 79.5 111.0 108
S3 93.0 108.0 84
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.090 0.863 1.060
S1 0.863 1.050 1.070
S3 1.060 1.070 0.875

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
23 19 0.0228
37 2 0.00172
84 2 0.00582
12000 2 0.0421
52400 2 0.0426
93 1 0.00355
116 1 0.00493
139 1 0.00633
231 1 0.0124
1400 1 0.0202
18800 1 0.0213
44100 1 0.0213
45200 1 0.0213
50900 1 0.0213

CL152 ----> CL23

image

No. of shared pairs: :19