Cluster no. 84

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Cluster is part of supercluster: 34

Cluster characteristics:

size 1993
size_real 1993
ecount 14103
supercluster 34
annotations_summary 0.15% organelle/plastid
pair_completeness 0.540185471406492
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00150526843953838
satellite_probability 1.65508917325132e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 644
S1 656
S3 693
comparative analysis - number of edges between species:
S2 S1 S3
S2 1360 1370 1590
S1 1370 1600 1650
S3 1590 1650 1920
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.030 0.966 1.000
S1 0.966 1.060 0.977
S3 1.000 0.977 1.020

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 3 0.0015

clusters with similarity:

Cluster Number of similarity hits
23 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
23 63 0.0581
165 10 0.03
1560 9 0.0298
625 6 0.0195
3090 6 0.02
25 4 0.00344
4080 4 0.0133
4 3 0.00117
9 3 0.00197
2050 3 0.00997
2110 3 0.00998
11400 3 0.01
17 2 0.00132
37 2 0.00141
39 2 0.00149
74 2 0.0016
80 2 0.00192
152 2 0.00582
395 2 0.00655
3960 2 0.00667
6850 2 0.00668
8050 2 0.00669
13100 2 0.00669
14700 2 0.0067
25800 2 0.0067
28800 2 0.0067
32700 2 0.0067
36800 2 0.0067
2 1 0.000402
5 1 0.000408
10 1 0.000653
11 1 0.000653
12 1 5e-04
13 1 0.000584
15 1 0.00162
18 1 0.000463
22 1 0.000786
26 1 0.000682
43 1 0.00149
46 1 0.00114
51 1 0.00158
55 1 0.00164
75 1 0.00139
90 1 0.00143
92 1 0.00167
93 1 0.00188
99 1 0.00262
119 1 0.00225
134 1 0.00235
160 1 0.00277
176 1 0.00279
193 1 0.00281
396 1 0.00317
479 1 0.00321
998 1 0.00331
1120 1 0.00334
1360 1 0.00332
2140 1 0.00333
3920 1 0.00333
4340 1 0.00333
5480 1 0.00334
6410 1 0.00334
8800 1 0.00334
9020 1 0.00334
9970 1 0.00336
10600 1 0.00334
11000 1 0.00336
11800 1 0.00334
12900 1 0.00334
13600 1 0.00334
13800 1 0.00334
13900 1 0.00336
19500 1 0.00335
24500 1 0.00335
26400 1 0.00335
28000 1 0.00335
29000 1 0.00335
29500 1 0.00335
29500 1 0.00335
31300 1 0.00335
35400 1 0.00335
36000 1 0.00335
36100 1 0.00335
37000 1 0.00335
39100 1 0.00335
39400 1 0.00335
48400 1 0.00335
48400 1 0.00335
49600 1 0.00335
50400 1 0.00335

CL84 ----> CL23

image

No. of shared pairs: :63

CL84 ----> CL165

image

No. of shared pairs: :10