Cluster no. 187

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Cluster is part of supercluster: 129

Cluster characteristics:

size 171
size_real 171
ecount 582
supercluster 129
annotations_summary 0.58% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
pair_completeness 0.613207547169811
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00584795321637427
satellite_probability 3.4734978037751e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 48
S1 68
S3 55
comparative analysis - number of edges between species:
S2 S1 S3
S2 59 70.0 48.0
S1 70 96.0 65.5
S3 48 65.5 60.0
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.100 0.994 0.910
S1 0.994 1.040 0.949
S3 0.910 0.949 1.160

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
SIRE Ty1-RT SIRE Ty1-RT 1 0.0058

clusters with similarity:

Cluster Number of similarity hits
51 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
51 17 0.0479
806 5 0.189
64 2 0.00612
3060 2 0.0889
547 1 0.0385
773 1 0.0435
28900 1 0.0465
31000 1 0.0465
51100 1 0.0465

CL187 ----> CL51

image

No. of shared pairs: :17