Cluster no. 216

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Cluster is part of supercluster: 158

Cluster characteristics:

size 119
size_real 119
ecount 478
supercluster 158
annotations_summary 100.00% organelle/plastid
pair_completeness 0.72463768115942
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00840336134453781
satellite_probability 1.10115207681596e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 36
S1 36
S3 47
comparative analysis - number of edges between species:
S2 S1 S3
S2 36.0 45 56.5
S1 45.0 46 65.0
S3 56.5 65 63.0
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.91 1.000 1.060
S1 1.00 0.904 1.080
S3 1.06 1.080 0.885

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 119 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
384 6 0.4
963 6 0.387
531 1 0.0741