Cluster no. 149

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Cluster is part of supercluster: 92

Cluster characteristics:

size 280
size_real 280
ecount 1247
supercluster 92
annotations_summary 10.71% Class_I/LTR/Ty1_copia/Tork:Ty1-GAG
3.57% Class_I/LTR/Ty1_copia/Tork:Ty1-PROT
1.43% Class_I/LTR/Ty1_copia/TAR:Ty1-PROT
0.36% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-PROT
pair_completeness 0.656804733727811
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00357142857142857
satellite_probability 3.15659983381055e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 82
S1 105
S3 93
comparative analysis - number of edges between species:
S2 S1 S3
S2 108 121 109
S1 121 184 176
S3 109 176 143
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.180 0.928 0.940
S1 0.928 0.992 1.070
S3 0.940 1.070 0.973

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tork Ty1-GAG Tork Ty1-GAG 30 0.1071
TAR Ty1-PROT TAR Ty1-PROT 4 0.0143
Tork Ty1-PROT Tork Ty1-PROT 10 0.0357
CRM Ty3-PROT CRM Ty3-PROT 1 0.0036

clusters connected through mates:

Cluster Number of shared
read pairs		 k
438 8 0.182
2950 5 0.154
37100 2 0.0667
5 1 0.000459
25 1 0.00112
64 1 0.00298
166 1 0.0105
285 1 0.0194
1100 1 0.0294
33700 1 0.0333