Cluster no. 162

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Cluster is part of supercluster: 105

Cluster characteristics:

size 216
size_real 216
ecount 887
supercluster 105
annotations_summary 88.89% organelle/plastid
0.46% organelle/mitochondria
pair_completeness 0.846153846153846
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00462962962962963
satellite_probability 9.43324980190488e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 78
S1 66
S3 72
comparative analysis - number of edges between species:
S2 S1 S3
S2 114.0 99.5 100
S1 99.5 94.0 83
S3 100.0 83.0 113
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.030 1.020 0.957
S1 1.020 1.090 0.898
S3 0.957 0.898 1.140

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 1 0.0046
plastid plastid 192 0.8889

clusters connected through mates:

Cluster Number of shared
read pairs		 k
365 6 0.387
421 5 0.294
265 1 0.0667
587 1 0.0741
7810 1 0.1