Cluster no. 165
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Cluster is part of supercluster: 108
Cluster characteristics:
| size |
209 |
| size_real |
209 |
| ecount |
1191 |
| supercluster |
108 |
| annotations_summary |
|
| pair_completeness |
0.492857142857143 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.00478468899521531 |
| satellite_probability |
2.89707838193454e-21 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S2 |
56 |
| S1 |
88 |
| S3 |
65 |
comparative analysis - number of edges between species:
|
S2 |
S1 |
S3 |
| S2 |
115 |
166 |
91 |
| S1 |
166 |
226 |
134 |
| S3 |
91 |
134 |
70 |
comparative analysis - observed/expected number of edges between species
|
S2 |
S1 |
S3 |
| S2 |
0.992 |
1.010 |
0.991 |
| S1 |
1.010 |
0.977 |
1.030 |
| S3 |
0.991 |
1.030 |
0.961 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
|
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 23 |
16 |
0.0194 |
| 84 |
10 |
0.03 |
| 4340 |
4 |
0.105 |
| 59 |
2 |
0.00446 |
| 1900 |
2 |
0.05 |
| 12200 |
2 |
0.0541 |
| 28500 |
2 |
0.0548 |
| 42600 |
2 |
0.0548 |
| 11 |
1 |
0.000788 |
| 39 |
1 |
0.000924 |
| 46 |
1 |
0.00162 |
| 68 |
1 |
0.00151 |
| 6410 |
1 |
0.0267 |
| 6710 |
1 |
0.0274 |
|
CL165 ----> CL23
No. of shared pairs: :16
CL165 ----> CL84
No. of shared pairs: :10