Cluster no. 179

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Cluster is part of supercluster: 121

Cluster characteristics:

size 184
size_real 184
ecount 763
supercluster 121
annotations_summary 92.39% organelle/plastid
0.54% organelle/mitochondria
pair_completeness 0.877551020408163
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00543478260869565
satellite_probability 1.10061933590066e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 45
S1 83
S3 56
comparative analysis - number of edges between species:
S2 S1 S3
S2 47.0 80 57.5
S1 80.0 162 102.0
S3 57.5 102 74.0
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.05 0.96 1.02
S1 0.96 1.04 0.97
S3 1.02 0.97 1.03

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 1 0.0054
plastid plastid 170 0.9239

clusters connected through mates:

Cluster Number of shared
read pairs
k
414 4 0.421
504 3 0.222
42 1 0.000979
94 1 0.0225
112 1 0.029