Cluster no. 158
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Cluster is part of supercluster: 101
Cluster characteristics:
| size |
232 |
| size_real |
232 |
| ecount |
666 |
| supercluster |
101 |
| annotations_summary |
|
| pair_completeness |
0.397590361445783 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.00431034482758621 |
| satellite_probability |
6.52979343237575e-21 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S2 |
74 |
| S1 |
83 |
| S3 |
75 |
comparative analysis - number of edges between species:
|
S2 |
S1 |
S3 |
| S2 |
48.0 |
72.5 |
63.5 |
| S1 |
72.5 |
122.0 |
82.5 |
| S3 |
63.5 |
82.5 |
59.0 |
comparative analysis - observed/expected number of edges between species
|
S2 |
S1 |
S3 |
| S2 |
0.944 |
0.947 |
1.120 |
| S1 |
0.947 |
1.060 |
0.968 |
| S3 |
1.120 |
0.968 |
0.935 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
|
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 36 |
28 |
0.0516 |
| 2160 |
5 |
0.0926 |
| 1420 |
4 |
0.0721 |
| 2970 |
4 |
0.0769 |
| 2540 |
2 |
0.0381 |
| 28100 |
2 |
0.0392 |
| 41 |
1 |
0.00456 |
| 98 |
1 |
0.00324 |
| 125 |
1 |
0.0059 |
| 247 |
1 |
0.0123 |
| 45800 |
1 |
0.0196 |
|
CL158 ----> CL36
No. of shared pairs: :28