Cluster no. 18

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Cluster is part of supercluster: 1

Cluster characteristics:

size 7354
size_real 7354
ecount 1470692
supercluster 1
annotations_summary 0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT
0.01% organelle/mitochondria
0.01% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase
0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
0.01% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
pair_completeness 0.327676475898177
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.028963829208594
satellite_probability 5.49941859234325e-19
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 2380
S1 2480
S3 2490
comparative analysis - number of edges between species:
S2 S1 S3
S2 146000 159000 158000
S1 159000 174000 173000
S3 158000 173000 171000
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.999 1.000 1.000
S1 1.000 0.999 1.000
S3 1.000 1.000 0.998

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 1 0.00014
EnSpm_CACTA CACTA-TPase EnSpm_CACTA CACTA-TPase 1 0.00014
Ale Ty1-INT Ale Ty1-INT 1 0.00014
Tork Ty1-INT Tork Ty1-INT 1 0.00014
Ale Ty1-PROT Ale Ty1-PROT 2 0.00027
TatV Ty3-GAG TatV Ty3-GAG 1 0.00014
Tekay Ty3-RH Tekay Ty3-RH 1 0.00014

clusters with similarity:

Cluster Number of similarity hits
35 58000
74 14500
39 770
37 28
417 6
7 3
678 2
875 2
3590 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
35 1470 0.411
74 781 0.277
39 427 0.147
5 161 0.0401
12 115 0.0323
37 32 0.0107
1130 10 0.00535
417 9 0.0048
7 8 0.002
4 7 0.0017
8 7 0.00288
678 7 0.00374
875 6 0.00321
3 4 0.00117
11 4 0.00129
16 4 0.00114
1500 4 0.00214
1 3 0.000777
10 3 0.000969
22 3 0.00106
24 3 0.00101
27 3 0.000981
42 3 0.00104
72 3 0.00136
119 3 0.00149
1590 3 0.00161
2070 3 0.00161
2540 3 0.00161
11400 3 0.00161
2 2 0.000494
13 2 0.00061
36 2 0.000849
40 2 0.000806
50 2 0.000815
56 2 0.000711
59 2 0.000879
76 2 0.000892
90 2 0.000883
3590 2 0.00107
5580 2 0.00107
8020 2 0.00107
9470 2 0.00107
13300 2 0.00107
13300 2 0.00107
14000 2 0.00107
15300 2 0.00107
18100 2 0.00107
26100 2 0.00107
35700 2 0.00107
37300 2 0.00107
42500 2 0.00107
43700 2 0.00107
47800 2 0.00107
48500 2 0.00107
49500 2 0.00107
6 1 0.000304
9 1 0.000324
21 1 0.000377
23 1 0.000377
25 1 0.000367
26 1 0.00033
28 1 0.00032
30 1 0.00034
32 1 0.000334
34 1 0.000468
38 1 0.000358
43 1 0.000447
45 1 0.000435
48 1 0.000421
49 1 0.000411
60 1 0.000439
65 1 0.000491
66 1 0.000477
68 1 0.000402
75 1 0.000437
81 1 0.000505
82 1 0.000522
84 1 0.000463
96 1 0.000463
97 1 0.00044
102 1 0.000521
118 1 0.000512
128 1 0.000496
130 1 0.000507
139 1 0.000507
156 1 0.000516
192 1 0.000531
200 1 0.000529
354 1 0.000535
398 1 0.000535
1190 1 0.000535
2030 1 0.000536
2350 1 0.000536
2870 1 0.000537
3100 1 0.000536
4810 1 0.000537
4930 1 0.000536
5570 1 0.000537
5630 1 0.000537
6410 1 0.000536
7520 1 0.000536
8830 1 0.000537
9570 1 0.000537
9770 1 0.000537
9930 1 0.000537
10300 1 0.000537
14600 1 0.000537
17100 1 0.000537
18600 1 0.000537
19500 1 0.000537
22900 1 0.000537
25300 1 0.000537
26000 1 0.000537
27900 1 0.000537
28200 1 0.000537
29300 1 0.000537
30300 1 0.000537
31500 1 0.000537
32900 1 0.000537
36500 1 0.000537
36700 1 0.000537
37000 1 0.000537
43100 1 0.000537
45300 1 0.000537
46600 1 0.000537
46800 1 0.000537
47200 1 0.000537
49300 1 0.000537
50800 1 0.000537

CL18 ----> CL35

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No. of shared pairs: :1466

CL18 ----> CL74

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No. of shared pairs: :781

CL18 ----> CL39

image

No. of shared pairs: :427

CL18 ----> CL5

image

No. of shared pairs: :161

CL18 ----> CL12

image

No. of shared pairs: :115

CL18 ----> CL37

image

No. of shared pairs: :32

CL18 ----> CL1128

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No. of shared pairs: :10