Cluster no. 127

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Cluster is part of supercluster: 70

Cluster characteristics:

size 450
size_real 450
ecount 1988
supercluster 70
annotations_summary 92.22% organelle/plastid
0.67% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
pair_completeness 0.906779661016949
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00222222222222222
satellite_probability 2.49088588504597e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 135
S1 160
S3 155
comparative analysis - number of edges between species:
S2 S1 S3
S2 167 233 186
S1 233 249 249
S3 186 249 235
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.965 1.080 0.943
S1 1.080 0.926 1.010
S3 0.943 1.010 1.040

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 415 0.9222
Tekay Ty3-INT Tekay Ty3-INT 3 0.0067

clusters connected through mates:

Cluster Number of shared
read pairs		 k
256 3 0.158
7780 3 0.231
8 1 0.00171
37 1 0.000885