Cluster no. 206

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Cluster is part of supercluster: 148

Cluster characteristics:

size 131
size_real 131
ecount 192
supercluster 148
annotations_summary 81.68% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
0.76% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH
0.76% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.76% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RH
pair_completeness 0.139130434782609
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00763358778625954
satellite_probability 6.94904844624655e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 48
S1 35
S3 48
comparative analysis - number of edges between species:
S2 S1 S3
S2 31 14 25
S1 14 17 23
S3 25 23 20
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.210 0.711 1.01
S1 0.711 1.120 1.20
S3 1.010 1.200 0.83

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Athila Ty3-RH Athila Ty3-RH 1 0.0076
Galadriel Ty3-RH Galadriel Ty3-RH 1 0.0076
Reina Ty3-RH Reina Ty3-RH 1 0.0076
Tekay Ty3-RH Tekay Ty3-RH 107 0.8168

clusters connected through mates:

Cluster Number of shared
read pairs		 k
154 7 0.0488
497 3 0.0465
4980 2 0.0385
41100 2 0.0396
34 1 0.00308
36 1 0.00185
1450 1 0.0185
4830 1 0.0192
11300 1 0.0196
38600 1 0.0198
51100 1 0.0198