Cluster no. 95

Cluster no. 95

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Cluster is part of supercluster: 41

Cluster characteristics:

size	1509
size_real	1509
ecount	7406
supercluster	41
annotations_summary	0.20% Class_II/Subclass_1/TIR/hAT:hAT-TPase 0.07% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT 0.07% organelle/plastid
pair_completeness	0.563730569948186
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000662690523525514
satellite_probability	1.29477276776204e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	399
S1	541
S3	569

comparative analysis - number of edges between species:

	S2	S1	S3
S2	525	678	788
S1	678	910	990
S3	788	990	1060

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	0.981	0.978	1.030
S1	0.978	1.010	1.000
S3	1.030	1.000	0.974

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 1 0.00066

TatV Ty3-RT TatV Ty3-RT 1 0.00066

hAT hAT-TPase hAT hAT-TPase 3 0.00199

clusters with similarity:

Cluster	Number of similarity hits

3	29
11	8
45	4
24	1
32	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

3	57	0.0324
11	39	0.027
32	28	0.0208
45	25	0.0387
1520	7	0.0324
447	5	0.0224
24	4	0.00304
2470	4	0.0187
2740	4	0.0188
9	3	0.00209
12	3	0.00157
76	3	0.00508
483	3	0.0135
1140	3	0.014
2330	3	0.014
2350	3	0.014
4590	3	0.0142
4950	3	0.0142
4	2	0.00081
39	2	0.00159
277	2	0.00833
387	2	0.00922
3140	2	0.00937
4930	2	0.00939
5200	2	0.00941
7310	2	0.00941
12000	2	0.00943
17200	2	0.00946
47300	2	0.00946
13	1	0.000615
14	1	0.000517
16	1	0.000536
25	1	0.000929
36	1	0.00142
37	1	0.000752
40	1	0.00121
41	1	0.00263
42	1	0.000816
46	1	0.00126
68	1	0.0012
80	1	0.00105
83	1	0.00234
86	1	0.00247
90	1	0.00163
92	1	0.00196
150	1	0.00412
184	1	0.00406
1660	1	0.00464
1670	1	0.00466
1710	1	0.00464
3380	1	0.00473
4100	1	0.00469
4100	1	0.00469
5550	1	0.00471
5800	1	0.00471
5990	1	0.00471
6000	1	0.00471
6820	1	0.00473
8090	1	0.00472
8900	1	0.00472
10200	1	0.00472
10300	1	0.00474
10900	1	0.00474
14300	1	0.00472
17900	1	0.00473
19500	1	0.00473
19700	1	0.00473
25400	1	0.00473
34400	1	0.00473
36900	1	0.00473
37400	1	0.00473
44000	1	0.00473
44800	1	0.00473

CL95 ----> CL3

No. of shared pairs: :57

CL95 ----> CL11

No. of shared pairs: :39

CL95 ----> CL32

No. of shared pairs: :28

CL95 ----> CL45

No. of shared pairs: :25