Cluster no. 11

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Cluster is part of supercluster: 6

Cluster characteristics:

size 8326
size_real 8326
ecount 93630
supercluster 6
annotations_summary 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-aRH
0.01% organelle/plastid
0.01% Class_I/LTR/Ty1_copia/TAR:Ty1-RH
0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.01% Class_I/LTR/Ty1_copia/Ty1-outgroup:Ty1-RT
pair_completeness 0.542708912358718
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00840739851068941
satellite_probability 5.9149989235368e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 2680
S1 2920
S3 2730
comparative analysis - number of edges between species:
S2 S1 S3
S2 10300 10600 9860
S1 10600 11800 10400
S3 9860 10400 9800
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.020 0.984 0.999
S1 0.984 1.020 0.990
S3 0.999 0.990 1.010

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.00012
SIRE Ty1-INT SIRE Ty1-INT 1 0.00012
TAR Ty1-RH TAR Ty1-RH 1 0.00012
Ty1-outgroup Ty1-RT Ty1-outgroup Ty1-RT 1 0.00012
Reina Ty3-INT Reina Ty3-INT 1 0.00012
Tekay Ty3-INT Tekay Ty3-INT 1 0.00012
TatIV_Ogre Ty3-aRH TatIV_Ogre Ty3-aRH 1 0.00012

clusters with similarity:

Cluster Number of similarity hits
4 1380
49 340
24 90
32 75
76 74
68 13
106 9
95 8
141 4
33 3
13 2
9 1
29 1
40 1
191 1
203 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
32 278 0.117
76 246 0.152
24 194 0.083
4 128 0.0366
49 64 0.0354
95 39 0.027
141 36 0.0276
203 17 0.0135
3 12 0.00432
355 11 0.00879
21 10 0.00493
13 9 0.0034
40 9 0.00486
42 9 0.004
68 9 0.00484
930 9 0.00725
38 8 0.00369
786 8 0.00645
1480 8 0.00645
16 7 0.00242
543 7 0.00562
770 7 0.00564
1300 7 0.00565
23 6 0.00297
3710 6 0.00485
9 5 0.00203
12 5 0.0017
14 5 0.00169
644 5 0.00402
648 5 0.00402
1930 5 0.00404
2 4 0.00117
6 4 0.0015
17 4 0.00163
18 4 0.00129
28 4 0.0016
37 4 0.0017
54 4 0.00274
811 4 0.00323
933 4 0.00323
1070 4 0.00323
2140 4 0.00323
3540 4 0.00323
8 3 0.00166
22 3 0.00136
26 3 0.00125
39 3 0.00132
74 3 0.00137
81 3 0.00222
3800 3 0.00243
3850 3 0.00243
4520 3 0.00243
4900 3 0.00243
5660 3 0.00243
7040 3 0.00243
7520 3 0.00243
8510 3 0.00243
9140 3 0.00243
9500 3 0.00243
11000 3 0.00243
13000 3 0.00243
1 2 0.000618
5 2 0.000591
7 2 0.000592
15 2 0.00129
19 2 0.00129
25 2 0.000952
27 2 0.000823
35 2 0.000681
36 2 0.00116
46 2 0.0011
52 2 0.00142
56 2 0.000915
64 2 0.0013
67 2 0.00124
70 2 0.00129
72 2 0.00127
78 2 0.00142
88 2 0.00136
90 2 0.00122
115 2 0.00156
191 2 0.00154
313 2 0.00161
387 2 0.00161
619 2 0.00161
838 2 0.00161
1060 2 0.00161
1100 2 0.00161
1250 2 0.00161
1960 2 0.00162
2110 2 0.00162
2450 2 0.00162
2590 2 0.00162
3130 2 0.00162
3500 2 0.00162
3710 2 0.00162
5610 2 0.00162
5920 2 0.00162
7700 2 0.00162
8140 2 0.00162
8740 2 0.00162
9260 2 0.00162
9330 2 0.00162
9740 2 0.00162
10600 2 0.00162
10700 2 0.00162
11400 2 0.00162
11700 2 0.00162
12400 2 0.00162
13000 2 0.00162
13700 2 0.00162
15600 2 0.00162
15800 2 0.00162
16300 2 0.00162
17500 2 0.00162
24600 2 0.00162
27100 2 0.00162
33600 2 0.00162
34000 2 0.00162
34000 2 0.00162
34400 2 0.00162
35000 2 0.00162
39900 2 0.00162
40200 2 0.00162
41800 2 0.00162
42700 2 0.00162
47000 2 0.00162
47900 2 0.00162
48000 2 0.00162
49800 2 0.00162
51700 2 0.00162
20 1 0.000663
29 1 0.000468
30 1 0.000432
31 1 0.00041
33 1 0.000476
34 1 0.000663
43 1 0.000622
44 1 0.000487
47 1 0.000659
48 1 0.000572
50 1 0.000547
59 1 0.000607
79 1 0.000622
80 1 0.000506
84 1 0.000653
85 1 0.000702
94 1 0.000786
96 1 0.000654
99 1 0.000759
102 1 0.000775
106 1 0.000728
114 1 0.000657
132 1 0.000799
134 1 0.000734
139 1 0.000743
144 1 0.000774
161 1 0.000773
164 1 0.000763
165 1 0.000788
167 1 0.000773
189 1 0.00079
193 1 0.000773
195 1 0.000806
230 1 0.000785
231 1 0.000788
247 1 0.00079
248 1 8e-04
296 1 0.000806
332 1 0.000796
377 1 0.000799
441 1 0.000803
476 1 0.000805
505 1 0.000805
567 1 0.000804
643 1 0.000806
649 1 0.000805
678 1 0.000805
687 1 0.000805
732 1 0.000805
907 1 0.000806
975 1 0.000807
977 1 0.000807
1180 1 0.000807
1490 1 0.000808
1620 1 0.000809
1640 1 0.000808
1670 1 0.000807
1680 1 0.000808
1850 1 0.000809
1940 1 0.000808
2020 1 0.000808
2020 1 0.000808
2350 1 0.000808
2430 1 0.000809
2510 1 0.000809
2520 1 0.000809
2570 1 0.000808
2770 1 0.000808
3190 1 0.000809
3440 1 0.000808
3490 1 0.000808
3760 1 0.000809
3880 1 0.000809
4110 1 0.000809
4330 1 0.000809
4340 1 0.000809
4400 1 0.000809
4480 1 0.000809
4560 1 0.000809
4630 1 0.000809
4690 1 0.000809
4790 1 0.000809
5540 1 0.000809
5600 1 0.000809
5660 1 0.000809
5750 1 0.00081
5880 1 0.00081
6330 1 0.000809
6590 1 0.000809
6940 1 0.000809
6970 1 0.000809
7200 1 0.00081
7220 1 0.000809
7470 1 0.00081
7500 1 0.00081
7630 1 0.000809
7640 1 0.000809
7920 1 0.000809
8090 1 0.000809
8230 1 0.000809
8410 1 0.000809
9370 1 0.000809
9480 1 0.000809
9920 1 0.000809
10500 1 0.000809
11200 1 0.000809
11500 1 0.000809
11600 1 0.000809
12000 1 0.00081
12100 1 0.000809
12200 1 0.000809
12300 1 0.000809
12400 1 0.000809
12500 1 0.000809
12600 1 0.00081
13200 1 0.000809
13500 1 0.000809
13600 1 0.000809
13700 1 0.00081
13900 1 0.000809
14000 1 0.00081
14100 1 0.000809
14200 1 0.000809
14200 1 0.000809
14500 1 0.000809
15400 1 0.00081
15900 1 0.00081
17100 1 0.00081
17200 1 0.00081
17300 1 0.00081
17600 1 0.00081
17700 1 0.00081
17700 1 0.00081
18700 1 0.00081
18800 1 0.00081
19500 1 0.00081
19700 1 0.00081
20000 1 0.00081
20200 1 0.00081
20500 1 0.00081
21100 1 0.00081
21200 1 0.00081
21400 1 0.00081
21900 1 0.00081
22300 1 0.00081
24000 1 0.00081
24400 1 0.00081
24800 1 0.00081
24800 1 0.00081
25200 1 0.00081
26200 1 0.00081
26600 1 0.00081
27100 1 0.00081
30100 1 0.00081
30900 1 0.00081
31000 1 0.00081
31100 1 0.00081
31300 1 0.00081
31900 1 0.00081
32600 1 0.00081
33600 1 0.00081
36600 1 0.00081
37600 1 0.00081
37900 1 0.00081
39400 1 0.00081
39700 1 0.00081
39800 1 0.00081
41100 1 0.00081
41400 1 0.00081
41700 1 0.00081
43100 1 0.00081
43400 1 0.00081
43900 1 0.00081
44100 1 0.00081
44300 1 0.00081
44600 1 0.00081
45800 1 0.00081
46300 1 0.00081
46300 1 0.00081
47200 1 0.00081
48500 1 0.00081
49800 1 0.00081
50000 1 0.00081
50600 1 0.00081
50700 1 0.00081
50900 1 0.00081
51000 1 0.00081
51700 1 0.00081
51800 1 0.00081
51900 1 0.00081
52200 1 0.00081

CL11 ----> CL32

image

No. of shared pairs: :278

CL11 ----> CL76

image

No. of shared pairs: :246

CL11 ----> CL24

image

No. of shared pairs: :194

CL11 ----> CL4

image

No. of shared pairs: :128

CL11 ----> CL49

image

No. of shared pairs: :64

CL11 ----> CL95

image

No. of shared pairs: :39

CL11 ----> CL141

image

No. of shared pairs: :36

CL11 ----> CL203

image

No. of shared pairs: :17

CL11 ----> CL3

image

No. of shared pairs: :12

CL11 ----> CL355

image

No. of shared pairs: :11

CL11 ----> CL21

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No. of shared pairs: :10