Cluster no. 196

Go back to cluster table

Cluster is part of supercluster: 138

Cluster characteristics:

size 148
size_real 148
ecount 691
supercluster 138
annotations_summary 53.38% organelle/plastid
pair_completeness 0.783132530120482
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00675675675675676
satellite_probability 5.03771729774194e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 46
S1 41
S3 61
comparative analysis - number of edges between species:
S2 S1 S3
S2 71 58 89
S1 58 57 80
S3 89 80 109
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.030 0.943 1.010
S1 0.943 1.040 1.020
S3 1.010 1.020 0.975

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 79 0.53

clusters connected through mates:

Cluster Number of shared
read pairs		 k
2640 6 0.48
1700 5 0.385
768 1 0.087
23800 1 0.1
44400 1 0.1
47200 1 0.1