Cluster no. 198
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Cluster is part of supercluster: 140
Cluster characteristics:
| size |
143 |
| size_real |
143 |
| ecount |
195 |
| supercluster |
140 |
| annotations_summary |
|
| pair_completeness |
0.243478260869565 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.048951048951049 |
| satellite_probability |
3.19671953366944e-18 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S2 |
46 |
| S1 |
41 |
| S3 |
56 |
comparative analysis - number of edges between species:
|
S2 |
S1 |
S3 |
| S2 |
73 |
70 |
102 |
| S1 |
70 |
53 |
85 |
| S3 |
102 |
85 |
147 |
comparative analysis - observed/expected number of edges between species
|
S2 |
S1 |
S3 |
| S2 |
0.954 |
1.080 |
0.984 |
| S1 |
1.080 |
0.965 |
0.963 |
| S3 |
0.984 |
0.963 |
1.040 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
|
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 42 |
36 |
0.034 |
| 29 |
25 |
0.0264 |
| 244 |
3 |
0.0423 |
| 2350 |
2 |
0.043 |
| 33400 |
2 |
0.0449 |
| 8 |
1 |
0.00162 |
| 48 |
1 |
0.0018 |
| 1350 |
1 |
0.0211 |
| 2410 |
1 |
0.0215 |
| 4040 |
1 |
0.0222 |
| 4400 |
1 |
0.0222 |
| 9150 |
1 |
0.0222 |
|
CL198 ----> CL42
No. of shared pairs: :36
CL198 ----> CL29
No. of shared pairs: :25