Cluster no. 60

Cluster no. 60

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Cluster is part of supercluster: 3

Cluster characteristics:

size	3284
size_real	3284
ecount	114925
supercluster	3
annotations_summary	0.09% organelle/plastid 0.09% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-INT 0.06% Class_I/LINE:LINE-RT 0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
pair_completeness	0.59727626459144
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0916565164433618
satellite_probability	1.09119458719491e-16
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	1060
S1	1070
S3	1150

comparative analysis - number of edges between species:

	S2	S1	S3
S2	11600	12200	12800
S1	12200	12900	13400
S3	12800	13400	13700

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	0.997	0.999	1.000
S1	0.999	0.999	1.000
S3	1.000	1.000	0.994

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 3 0.00091

LINE LINE-RT LINE LINE-RT 2 0.00061

Tekay Ty3-CHDII Tekay Ty3-CHDII 1 0.00030

Tcn1 Ty3-INT Tcn1 Ty3-INT 3 0.00091

clusters with similarity:

Cluster	Number of similarity hits

21	458
33	59
67	10
22	1
80	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

21	232	0.192
33	95	0.0742
67	8	0.0102
291	7	0.0158
12	6	0.00284
9	4	0.00244
59	4	0.00484
1120	4	0.0095
1670	4	0.00959
4	3	0.00112
38	3	0.00222
1460	3	0.00717
1880	3	0.00717
2450	3	0.00719
2530	3	0.00719
1	2	0.000828
3	2	0.00102
22	2	0.00144
36	2	0.00221
39	2	0.00137
42	2	0.0014
423	2	0.00465
1210	2	0.00478
2420	2	0.00478
3820	2	0.00481
17800	2	0.00482
42000	2	0.00482
2	1	0.000384
8	1	0.00101
13	1	0.000547
14	1	0.000468
17	1	0.000612
18	1	0.000439
20	1	0.00145
27	1	0.000621
28	1	0.000595
29	1	0.00076
35	1	0.000472
37	1	0.000653
40	1	0.000968
41	1	0.00171
45	1	0.00118
46	1	0.001
56	1	0.000732
64	1	0.00139
69	1	0.00146
70	1	0.00138
72	1	0.00133
74	1	0.00073
75	1	0.00119
80	1	0.000864
86	1	0.00164
119	1	0.00178
125	1	0.00187
135	1	0.0021
156	1	0.00204
164	1	0.00204
269	1	0.00237
329	1	0.00231
1430	1	0.00238
1600	1	0.00239
1700	1	0.00239
1970	1	0.0024
2290	1	0.0024
2400	1	0.0024
2670	1	0.00241
2900	1	0.0024
4380	1	0.0024
4720	1	0.0024
5000	1	0.0024
5160	1	0.0024
5740	1	0.0024
6060	1	0.00241
6470	1	0.0024
6510	1	0.0024
6800	1	0.0024
6840	1	0.0024
7130	1	0.0024
7710	1	0.00241
8020	1	0.00241
8380	1	0.00241
9170	1	0.00241
9190	1	0.00241
9770	1	0.00241
10600	1	0.00241
11300	1	0.00241
11900	1	0.00241
12500	1	0.00241
12600	1	0.00241
13100	1	0.00241
13900	1	0.00241
14200	1	0.00241
14500	1	0.00241
17200	1	0.00241
17500	1	0.00241
21500	1	0.00241
21800	1	0.00241
23900	1	0.00241
29300	1	0.00241
31600	1	0.00241
32000	1	0.00241
32100	1	0.00241
32200	1	0.00241
33500	1	0.00241
33500	1	0.00241
34300	1	0.00241
36100	1	0.00241
36600	1	0.00241
40100	1	0.00241
43900	1	0.00241
45800	1	0.00241
49300	1	0.00241
52500	1	0.00241

CL60 ----> CL21

No. of shared pairs: :232

CL60 ----> CL33

No. of shared pairs: :95