Cluster no. 110

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Cluster is part of supercluster: 55

Cluster characteristics:

size	835
size_real	835
ecount	3053
supercluster	55
annotations_summary	22.16% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT 18.32% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH 10.18% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH 7.19% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-PROT 2.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-aRH 0.36% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RT 0.24% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-aRH 0.12% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RH
pair_completeness	0.634050880626223
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00119760479041916
satellite_probability	4.97759293480724e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	263
S1	280
S3	292

comparative analysis - number of edges between species:

	S2	S1	S3
S2	290	315	341
S1	315	293	366
S3	341	366	426

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	0.989	1.040	0.971
S1	1.040	0.943	1.010
S3	0.971	1.010	1.010

protein domains:

Reads annotation summary

cl_string domain Freq proportion

TatV Ty3-PROT TatV Ty3-PROT 60 0.0719

TatIV_Ogre Ty3-RH TatIV_Ogre Ty3-RH 1 0.0012

TatV Ty3-RH TatV Ty3-RH 153 0.1832

TatIV_Ogre Ty3-RT TatIV_Ogre Ty3-RT 3 0.0036

TatV Ty3-RT TatV Ty3-RT 185 0.2216

TatII Ty3-aRH TatII Ty3-aRH 2 0.0024

TatIV_Ogre Ty3-aRH TatIV_Ogre Ty3-aRH 17 0.0204

TatV Ty3-aRH TatV Ty3-aRH 85 0.1018

clusters with similarity:

Cluster	Number of similarity hits

46	5
85	5

clusters connected through mates:

Cluster	Number of shared read pairs	k

46	28	0.0414
85	26	0.0917
2510	4	0.0412
907	3	0.0302
1260	3	0.0302
2890	3	0.0309
3160	3	0.0311
8570	2	0.0211
13800	2	0.0211
15000	2	0.0212
23300	2	0.0212
28600	2	0.0212
25	1	0.00104
37	1	0.000825
50	1	0.00146
131	1	0.00399
292	1	0.0101
731	1	0.0103
1010	1	0.0101
1300	1	0.0102
1520	1	0.0102
4570	1	0.0105
6980	1	0.0106
7920	1	0.0106
10900	1	0.0105
18900	1	0.0106
21300	1	0.0106
23000	1	0.0106
25500	1	0.0106
27700	1	0.0106
32600	1	0.0106
37300	1	0.0106
40100	1	0.0106
43400	1	0.0106
43600	1	0.0106

CL110 ----> CL46

No. of shared pairs: :28

CL110 ----> CL85

No. of shared pairs: :26