Cluster no. 112

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Cluster is part of supercluster: 56

Cluster characteristics:

size 809
size_real 809
ecount 6341
supercluster 56
annotations_summary 99.51% organelle/plastid
0.49% organelle/mitochondria
pair_completeness 0.868360277136259
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00123609394313968
satellite_probability 6.1246173690846e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 268
S1 273
S3 268
comparative analysis - number of edges between species:
S2 S1 S3
S2 698 726 704
S1 726 712 684
S3 704 684 705
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.978 1.020 1.000
S1 1.020 1.000 0.977
S3 1.000 0.977 1.020

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 4 0.0049
plastid plastid 805 0.9951

clusters connected through mates:

Cluster Number of shared
read pairs		 k
94 11 0.164
109 10 0.182
160 1 0.0109
179 1 0.029
181 1 0.0286
189 1 0.0167
338 1 0.0294
499 1 0.0282
1050 1 0.029
13400 1 0.0333
14000 1 0.0333
23500 1 0.0339
44800 1 0.0339
52000 1 0.0339

CL112 ----> CL94

image

No. of shared pairs: :11

CL112 ----> CL109

image

No. of shared pairs: :10