Cluster no. 126
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Cluster is part of supercluster: 69
Cluster characteristics:
| size |
478 |
| size_real |
478 |
| ecount |
5793 |
| supercluster |
69 |
| annotations_summary |
|
| pair_completeness |
0.636986301369863 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.0418410041841004 |
| satellite_probability |
1.71598959185532e-19 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S2 |
132 |
| S1 |
153 |
| S3 |
193 |
comparative analysis - number of edges between species:
|
S2 |
S1 |
S3 |
| S2 |
505 |
514 |
715 |
| S1 |
514 |
504 |
678 |
| S3 |
715 |
678 |
971 |
comparative analysis - observed/expected number of edges between species
|
S2 |
S1 |
S3 |
| S2 |
0.973 |
1.010 |
1.010 |
| S1 |
1.010 |
1.020 |
0.979 |
| S3 |
1.010 |
0.979 |
1.010 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
|
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 4 |
47 |
0.0203 |
| 5 |
38 |
0.0172 |
| 33 |
3 |
0.00327 |
| 2 |
1 |
0.000446 |
| 7 |
1 |
0.000455 |
| 31 |
1 |
0.000795 |
| 49 |
1 |
0.0016 |
| 62 |
1 |
0.00966 |
| 73 |
1 |
0.00207 |
| 4360 |
1 |
0.018 |
| 22400 |
1 |
0.0185 |
| 30000 |
1 |
0.0185 |
|
CL126 ----> CL4
No. of shared pairs: :47
CL126 ----> CL5
No. of shared pairs: :38