Cluster no. 91

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Cluster is part of supercluster: 10

Cluster characteristics:

size	1670
size_real	1670
ecount	17457
supercluster	10
annotations_summary	0.12% organelle/plastid 0.06% organelle/mitochondria 0.06% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT 0.06% Class_II/Subclass_2/Helitron:Helitron-HEL1 0.06% Class_I/LTR/Ty1_copia/TAR:Ty1-INT
pair_completeness	0.735966735966736
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00179640718562874
satellite_probability	8.20691448488047e-23
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	518
S1	594
S3	558

comparative analysis - number of edges between species:

	S2	S1	S3
S2	1570	1930	1760
S1	1930	2340	2150
S3	1760	2150	1850

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	0.988	0.997	1.010
S1	0.997	0.990	1.010
S3	1.010	1.010	0.972

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 1 0.0006

plastid plastid 2 0.0012

Helitron Helitron-HEL1 Helitron Helitron-HEL1 1 0.0006

TAR Ty1-INT TAR Ty1-INT 1 0.0006

Ivana Ty1-PROT Ivana Ty1-PROT 1 0.0006

clusters with similarity:

Cluster	Number of similarity hits

83	7
36	6

clusters connected through mates:

Cluster	Number of shared read pairs	k

83	77	0.224
36	39	0.063
429	18	0.13
451	7	0.0515
379	4	0.0292
8950	3	0.0233
42	2	0.00175
67	2	0.004
17000	2	0.0156
3	1	0.000598
4	1	0.000419
9	1	0.000739
16	1	0.000561
20	1	0.00249
22	1	0.000907
37	1	0.000803
39	1	0.000852
50	1	0.00139
57	1	0.00258
61	1	0.00356
69	1	0.0025
72	1	0.00214
75	1	0.00181
96	1	0.00237
421	1	0.00741
1920	1	0.00766
6870	1	0.00775
13300	1	0.00778
44300	1	0.00781

CL91 ----> CL83

No. of shared pairs: :77

CL91 ----> CL36

No. of shared pairs: :39

CL91 ----> CL429

No. of shared pairs: :18