Cluster no. 101

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Cluster is part of supercluster: 39

Cluster characteristics:

size 1129
size_real 1129
ecount 7487
supercluster 39
annotations_summary 0.09% Class_I/LINE:LINE-RT
pair_completeness 0.61055634807418
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000885739592559787
satellite_probability 6.64175142550315e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 374
S1 393
S3 362
comparative analysis - number of edges between species:
S2 S1 S3
S2 845 878 726
S1 878 1030 847
S3 726 847 708
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.060 0.973 0.973
S1 0.973 1.020 1.010
S3 0.973 1.010 1.020

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
LINE LINE-RT LINE LINE-RT 1 0.00089

clusters with similarity:

Cluster Number of similarity hits
25 11
123 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
25 63 0.0628
123 37 0.148
48 3 0.00462
2700 3 0.0214
6110 3 0.0217
39 2 0.00169
12 1 0.000544
13 1 0.000644
33 1 0.000998
86 1 0.00302
100 1 0.00409
5950 1 0.00727
6610 1 0.00727
9030 1 0.00725
19800 1 0.00727
22700 1 0.00727
27400 1 0.00727
28000 1 0.00727
40400 1 0.00727
43300 1 0.00727

CL101 ----> CL25

image

No. of shared pairs: :63

CL101 ----> CL123

image

No. of shared pairs: :37