Cluster no. 174

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Cluster is part of supercluster: 116

Cluster characteristics:

size 196
size_real 196
ecount 695
supercluster 116
annotations_summary 69.90% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase
pair_completeness 0.647058823529412
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00510204081632653
satellite_probability 2.39038732047764e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 60
S1 76
S3 60
comparative analysis - number of edges between species:
S2 S1 S3
S2 50.0 92.5 62
S1 92.5 119.0 79
S3 62.0 79.0 59
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.831 1.080 1.050
S1 1.080 0.980 0.945
S3 1.050 0.945 1.030

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
EnSpm_CACTA CACTA-TPase EnSpm_CACTA CACTA-TPase 137 0.7

clusters connected through mates:

Cluster Number of shared
read pairs		 k
241 15 0.469
3810 3 0.128
7700 3 0.13
2610 2 0.0851
26600 2 0.0909
13 1 0.000696
48 1 0.00187
294 1 0.0308
674 1 0.0339
2860 1 0.0426
4280 1 0.0444
12300 1 0.0465
18300 1 0.0455
28000 1 0.0455

CL174 ----> CL241

image

No. of shared pairs: :15