Cluster no. 57

Cluster no. 57

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Cluster is part of supercluster: 5

Cluster characteristics:

size	3781
size_real	3781
ecount	90511
supercluster	5
annotations_summary	0.03% Class_I/pararetrovirus:PARA-RH
pair_completeness	0.757787075778708
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0745834435334568
satellite_probability	1.0784849221206e-18
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	1240
S1	1290
S3	1250

comparative analysis - number of edges between species:

	S2	S1	S3
S2	9350	10200	9560
S1	10200	11400	10300
S3	9560	10300	9590

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	0.997	0.996	1.010
S1	0.996	1.010	0.993
S3	1.010	0.993	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

pararetrovirus PARA-RH pararetrovirus PARA-RH 1 0.00026

clusters with similarity:

Cluster	Number of similarity hits

63	235
47	143

clusters connected through mates:

Cluster	Number of shared read pairs	k

63	167	0.344
47	112	0.206
122	20	0.0618
328	7	0.026
8	6	0.0072
316	6	0.0221
807	5	0.0189
1020	5	0.0189
1420	5	0.0189
3840	4	0.0152
495	3	0.0113
3480	3	0.0114
9190	3	0.0115
2010	2	0.00755
2810	2	0.00763
3320	2	0.00762
6900	2	0.00762
8610	2	0.00763
10200	2	0.00763
36400	2	0.00765
41000	2	0.00765
4	1	0.000397
7	1	0.000416
10	1	0.000669
16	1	0.000522
31	1	0.000682
42	1	0.000784
44	1	0.000926
52	1	0.00228
68	1	0.00113
91	1	0.00258
296	1	0.00374
713	1	0.00379
2000	1	0.0038
6290	1	0.00381
8200	1	0.00383
10300	1	0.00383
10500	1	0.00382
11100	1	0.00383
11700	1	0.00382
13500	1	0.00382
21600	1	0.00382
22400	1	0.00382
22900	1	0.00382
23300	1	0.00382
25900	1	0.00382
27300	1	0.00382
30200	1	0.00382
41100	1	0.00382
49300	1	0.00382

CL57 ----> CL63

No. of shared pairs: :167

CL57 ----> CL47

No. of shared pairs: :112

CL57 ----> CL122

No. of shared pairs: :20