Cluster no. 131

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Cluster is part of supercluster: 75

Cluster characteristics:

size 414
size_real 414
ecount 737
supercluster 75
annotations_summary
pair_completeness 0.137362637362637
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00241545893719807
satellite_probability 1.61880609779879e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 121
S1 156
S3 137
comparative analysis - number of edges between species:
S2 S1 S3
S2 59.0 75.5 73
S1 75.5 102.0 97
S3 73.0 97.0 85
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.010 0.977 1.020
S1 0.977 0.998 1.020
S3 1.020 1.020 0.963

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
97 20 0.0352
1260 4 0.025
1260 3 0.0184
1560 3 0.0186
2660 2 0.0125
3120 2 0.0126
6570 2 0.0126
10900 2 0.0126
29700 2 0.0127
48300 2 0.0127
13 1 0.000636
36 1 0.00154
64 1 0.00216
110 1 0.00399
351 1 0.00573
1850 1 0.00627
4780 1 0.00631
5620 1 0.00629
12300 1 0.00631
16400 1 0.00633
20200 1 0.00633
23500 1 0.00633
27500 1 0.00633
28200 1 0.00633
30900 1 0.00633
34900 1 0.00633
41500 1 0.00633

CL131 ----> CL97

image

No. of shared pairs: :20