Cluster no. 68

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Cluster is part of supercluster: 28

Cluster characteristics:

size 2947
size_real 2947
ecount 18619
supercluster 28
annotations_summary 0.03% Class_I/LTR/Ty1_copia/Alesia:Ty1-INT
0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-INT
0.03% organelle/plastid
0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
pair_completeness 0.404001905669366
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00542925008483203
satellite_probability 1.08796458838458e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 956
S1 1020
S3 972
comparative analysis - number of edges between species:
S2 S1 S3
S2 2010 2020 1970
S1 2020 2280 2150
S3 1970 2150 2070
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.040 0.972 0.988
S1 0.972 1.020 1.000
S3 0.988 1.000 1.010

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.00034
Alesia Ty1-INT Alesia Ty1-INT 1 0.00034
Ale Ty1-RT Ale Ty1-RT 1 0.00034
TatII Ty3-INT TatII Ty3-INT 1 0.00034

clusters with similarity:

Cluster Number of similarity hits
13 32
45 32
11 13
106 3
40 2
150 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
13 89 0.0436
45 48 0.0452
106 17 0.0222
150 17 0.0259
32 15 0.00853
116 14 0.0179
11 9 0.00484
185 8 0.0117
40 6 0.00482
203 6 0.00924
369 6 0.00945
2090 6 0.00953
902 5 0.00792
981 5 0.00794
16 4 0.00175
36 4 0.00358
42 4 0.00244
1120 4 0.00634
2760 4 0.00636
2 3 0.00107
3 3 0.00138
10 3 0.00161
14 3 0.00128
17 3 0.00163
23 3 0.00212
39 3 0.00179
296 3 0.00474
850 3 0.00477
2100 3 0.00477
2620 3 0.00478
5020 3 0.00478
7190 3 0.00478
9900 3 0.00478
11800 3 0.00478
13400 3 0.00478
12 2 0.00086
24 2 0.00116
28 2 0.00106
30 2 0.00117
37 2 0.00115
44 2 0.00138
48 2 0.00176
70 2 0.00214
73 2 0.0019
74 2 0.00127
80 2 0.00146
90 2 0.00195
407 2 0.00313
1430 2 0.00317
1570 2 0.00318
1900 2 0.00318
2030 2 0.00317
3150 2 0.00318
5000 2 0.00318
5460 2 0.00319
6360 2 0.00319
7740 2 0.00319
8470 2 0.00319
9410 2 0.00319
16500 2 0.00319
25900 2 0.00319
27200 2 0.00319
30200 2 0.00319
37000 2 0.00319
37300 2 0.00319
39900 2 0.00319
42200 2 0.00319
47200 2 0.00319
51800 2 0.00319
1 1 0.000381
4 1 0.000347
6 1 0.000486
7 1 0.000361
9 1 0.00054
18 1 0.000402
20 1 0.00111
21 1 0.000705
25 1 0.00067
26 1 0.000557
38 1 0.000641
50 1 0.000821
51 1 0.00104
52 1 0.00124
56 1 0.000634
57 1 0.00113
59 1 0.000963
64 1 0.00107
71 1 0.00113
78 1 0.00125
95 1 0.0012
97 1 0.000965
107 1 0.00127
124 1 0.00132
140 1 0.00144
141 1 0.00144
161 1 0.00146
165 1 0.00151
248 1 0.00156
342 1 0.00157
363 1 0.00159
494 1 0.00156
528 1 0.00156
614 1 0.00158
619 1 0.00157
662 1 0.00158
868 1 0.00158
882 1 0.00158
988 1 0.00159
1060 1 0.00159
1360 1 0.00159
1740 1 0.00159
1950 1 0.00159
2000 1 0.00159
2030 1 0.00159
2270 1 0.00159
2400 1 0.00159
3090 1 0.00159
3260 1 0.00159
3500 1 0.00159
3620 1 0.00159
4180 1 0.00159
4180 1 0.00159
5520 1 0.00159
6040 1 0.00159
6080 1 0.00159
6370 1 0.00159
6440 1 0.00159
6800 1 0.00159
7260 1 0.00159
7320 1 0.00159
7650 1 0.0016
7980 1 0.00159
10300 1 0.00159
10600 1 0.00159
11300 1 0.0016
11400 1 0.00159
11400 1 0.00159
11600 1 0.0016
11600 1 0.00159
11700 1 0.00159
12100 1 0.00159
12900 1 0.00159
13600 1 0.00159
13600 1 0.00159
14000 1 0.00159
14000 1 0.0016
14300 1 0.0016
14600 1 0.0016
14900 1 0.0016
17400 1 0.0016
21400 1 0.0016
22500 1 0.0016
22900 1 0.0016
23000 1 0.0016
24500 1 0.0016
25100 1 0.0016
25800 1 0.0016
26100 1 0.0016
29100 1 0.0016
29600 1 0.0016
29800 1 0.0016
31200 1 0.0016
31500 1 0.0016
33400 1 0.0016
33500 1 0.0016
35000 1 0.0016
37300 1 0.0016
37900 1 0.0016
38300 1 0.0016
38400 1 0.0016
41400 1 0.0016
43500 1 0.0016
45300 1 0.0016
47800 1 0.0016
50100 1 0.0016
50300 1 0.0016
50800 1 0.0016
50900 1 0.0016
51700 1 0.0016
52000 1 0.0016
52200 1 0.0016

CL68 ----> CL13

image

No. of shared pairs: :89

CL68 ----> CL45

image

No. of shared pairs: :48

CL68 ----> CL106

image

No. of shared pairs: :17

CL68 ----> CL150

image

No. of shared pairs: :17

CL68 ----> CL32

image

No. of shared pairs: :15

CL68 ----> CL116

image

No. of shared pairs: :14