Cluster no. 94

Go back to cluster table

Cluster is part of supercluster: 40

Cluster characteristics:

size 1513
size_real 1513
ecount 10438
supercluster 40
annotations_summary 99.74% organelle/plastid
0.20% organelle/mitochondria
0.20% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
0.07% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
pair_completeness 0.90314465408805
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000660938532716457
satellite_probability 3.13317635625349e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 499
S1 476
S3 538
comparative analysis - number of edges between species:
S2 S1 S3
S2 1150 1080 1140
S1 1080 1070 1180
S3 1140 1180 1410
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.060 1.010 0.944
S1 1.010 1.000 0.991
S3 0.944 0.991 1.060

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 3 0.00198
plastid plastid 1509 0.99736
Ale Ty1-RH Ale Ty1-RH 3 0.00198
Athila Ty3-RT Athila Ty3-RT 1 0.00066

clusters connected through mates:

Cluster Number of shared
read pairs		 k
112 11 0.164
871 4 0.0889
132 3 0.0536
270 2 0.043
768 2 0.0488
21800 2 0.0506
11 1 0.000786
23 1 0.00121
106 1 0.00559
168 1 0.0222
179 1 0.0225
181 1 0.0222
232 1 0.023
291 1 0.015
308 1 0.0227
354 1 0.022
587 1 0.0233
10500 1 0.0256
46200 1 0.0253

CL94 ----> CL112

image

No. of shared pairs: :11