Cluster no. 180

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Cluster is part of supercluster: 122

Cluster characteristics:

size 184
size_real 184
ecount 901
supercluster 122
annotations_summary 1.09% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
pair_completeness 0.614035087719298
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00543478260869565
satellite_probability 3.4734978037751e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 47
S1 70
S3 67
comparative analysis - number of edges between species:
S2 S1 S3
S2 72 104 90
S1 104 115 117
S3 90 117 91
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.913 1.050 1.020
S1 1.050 0.915 1.050
S3 1.020 1.050 0.923

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tekay Ty3-CHDII Tekay Ty3-CHDII 2 0.011

clusters with similarity:

Cluster Number of similarity hits
54 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
54 13 0.053
1550 3 0.122
10 1 0.000796
16 1 0.000596
19 1 0.003
37 1 0.000877
56 1 0.00103
118 1 0.0087
133 1 0.0183
1060 1 0.0385
11800 1 0.0426
20700 1 0.0435
26800 1 0.0435
50300 1 0.0435

CL180 ----> CL54

image

No. of shared pairs: :13