Cluster no. 178

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Cluster is part of supercluster: 120

Cluster characteristics:

size 185
size_real 185
ecount 354
supercluster 120
annotations_summary 0.54% Class_I/LINE:LINE-ENDO
pair_completeness 0.48
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00540540540540541
satellite_probability 8.26675057188842e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 54
S1 69
S3 62
comparative analysis - number of edges between species:
S2 S1 S3
S2 26 31 26
S1 31 79 45
S3 26 45 45
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.340 0.853 0.956
S1 0.853 1.160 0.886
S3 0.956 0.886 1.180

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
LINE LINE-ENDO LINE LINE-ENDO 1 0.0054

clusters connected through mates:

Cluster Number of shared
read pairs		 k
602 7 0.165
592 4 0.0988
2240 3 0.087
5320 3 0.087
166 2 0.0203
5770 2 0.058
6530 2 0.058
48 1 0.00183
1420 1 0.0294
1640 1 0.0267
2140 1 0.0274
6060 1 0.029
8130 1 0.0303
9290 1 0.0294
45000 1 0.0299
46300 1 0.0299