Cluster no. 100

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Cluster is part of supercluster: 45

Cluster characteristics:

size	1172
size_real	1172
ecount	6125
supercluster	45
annotations_summary	16.72% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT 13.91% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT 7.42% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH 6.48% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG 3.84% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-PROT 0.09% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG 0.09% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG 0.09% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT 0.09% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-GAG
pair_completeness	0.688760806916426
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000853242320819113
satellite_probability	1.94805139038498e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	368
S1	427
S3	377

comparative analysis - number of edges between species:

	S2	S1	S3
S2	703	719	626
S1	719	743	681
S3	626	681	628

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	1.030	1.000	0.967
S1	1.000	0.991	1.010
S3	0.967	1.010	1.030

protein domains:

Reads annotation summary

cl_string domain Freq proportion

SIRE Ty1-GAG SIRE Ty1-GAG 1 0.00085

Athila Ty3-GAG Athila Ty3-GAG 76 0.06485

Galadriel Ty3-GAG Galadriel Ty3-GAG 1 0.00085

Reina Ty3-GAG Reina Ty3-GAG 1 0.00085

Athila Ty3-INT Athila Ty3-INT 196 0.16724

TatV Ty3-INT TatV Ty3-INT 1 0.00085

Athila Ty3-PROT Athila Ty3-PROT 45 0.03840

Athila Ty3-RH Athila Ty3-RH 87 0.07423

Athila Ty3-RT Athila Ty3-RT 163 0.13908

clusters with similarity:

Cluster	Number of similarity hits

25	3
22	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

25	16	0.0164
46	3	0.00434
5060	3	0.0271
48	2	0.00322
24800	2	0.0183
4	1	0.000422
7	1	0.000444
8	1	0.00147
12	1	0.000553
13	1	0.000656
16	1	0.000567
17	1	0.000753
22	1	0.000923
27	1	0.000767
34	1	0.00261
37	1	0.000815
42	1	0.00089
73	1	0.00186
85	1	0.00336
90	1	0.00196
93	1	0.00291
96	1	0.00248
101	1	0.00409
120	1	0.00784
298	1	0.00873
3180	1	0.00901
6010	1	0.00917
12300	1	0.00913
16900	1	0.00917
18900	1	0.00917
35700	1	0.00917
47700	1	0.00917

CL100 ----> CL25

No. of shared pairs: :16