Cluster no. 27

Cluster no. 27

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Cluster is part of supercluster: 3

Cluster characteristics:

size	6333
size_real	6333
ecount	948308
supercluster	3
annotations_summary	0.03% Class_I/LINE:LINE-RT 0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT 0.02% organelle/plastid 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT 0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-PROT 0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-INT 0.02% Class_I/LTR/Ty1_copia/TAR:Ty1-RT
pair_completeness	0.451856946354883
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00331596399810516
satellite_probability	4.28848727092841e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	1930
S1	2180
S3	2220

comparative analysis - number of edges between species:

	S2	S1	S3
S2	87700	97100	104000
S1	97100	107000	114000
S3	104000	114000	123000

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	0.999	1.000	0.999
S1	1.000	1.000	0.998
S3	0.999	0.998	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 1 0.00016

LINE LINE-RT LINE LINE-RT 2 0.00032

TAR Ty1-RT TAR Ty1-RT 1 0.00016

Athila Ty3-INT Athila Ty3-INT 1 0.00016

TatIII Ty3-INT TatIII Ty3-INT 1 0.00016

Tekay Ty3-INT Tekay Ty3-INT 1 0.00016

TatV Ty3-PROT TatV Ty3-PROT 1 0.00016

clusters with similarity:

Cluster	Number of similarity hits

10	15400
28	6830
1	1100
117	70
37	7
38	5
268	3
30	2
923	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

28	1000	0.406
1	731	0.229
117	74	0.0578
10	63	0.0259
56	26	0.0121
164	19	0.0149
268	15	0.0123
37	13	0.00562
513	11	0.0091
4	9	0.0026
42	8	0.00362
923	8	0.00665
1360	7	0.00583
9	6	0.00248
12	6	0.00207
30	6	0.00263
8	5	0.00283
624	5	0.00415
7	4	0.0012
22	4	0.00184
74	4	0.00186
1180	4	0.00333
4990	4	0.00334
5500	4	0.00334
5	3	0.000896
6	3	0.00114
18	3	0.000981
1980	3	0.0025
2220	3	0.0025
2700	3	0.0025
4290	3	0.0025
11	2	0.000823
20	2	0.00136
58	2	0.00131
586	2	0.00166
4700	2	0.00167
6640	2	0.00167
31000	2	0.00167
13	1	0.000383
14	1	0.000343
34	1	0.00068
35	1	0.000345
38	1	0.000469
39	1	0.000446
40	1	0.000551
46	1	0.000562
50	1	0.000559
60	1	0.000621
61	1	0.000741
70	1	0.000664
97	1	0.000622
100	1	0.000767
155	1	0.000779
692	1	0.000835
737	1	0.000832
848	1	0.000834
2860	1	0.000834
2980	1	0.000834
3640	1	0.000835
3680	1	0.000835
3860	1	0.000835
5030	1	0.000835
7090	1	0.000836
7460	1	0.000835
8270	1	0.000835
10300	1	0.000836
12600	1	0.000835
14300	1	0.000835
16300	1	0.000836
18300	1	0.000836
25100	1	0.000836
25600	1	0.000836
26100	1	0.000836
34600	1	0.000836
34700	1	0.000836
35300	1	0.000836
36500	1	0.000836
37100	1	0.000836
39200	1	0.000836
39200	1	0.000836
39400	1	0.000836
40200	1	0.000836
40900	1	0.000836
42500	1	0.000836
43700	1	0.000836
45200	1	0.000836
45900	1	0.000836
46400	1	0.000836
47500	1	0.000836
47900	1	0.000836

CL27 ----> CL28

No. of shared pairs: :1001

CL27 ----> CL1

No. of shared pairs: :731

CL27 ----> CL117

No. of shared pairs: :74

CL27 ----> CL10

No. of shared pairs: :63

CL27 ----> CL56

No. of shared pairs: :26

CL27 ----> CL164

No. of shared pairs: :19

CL27 ----> CL268

No. of shared pairs: :15

CL27 ----> CL37

No. of shared pairs: :13

CL27 ----> CL513

No. of shared pairs: :11