Cluster no. 148

Cluster no. 148

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Cluster is part of supercluster: 91

Cluster characteristics:

size	297
size_real	297
ecount	619
supercluster	91
annotations_summary	0.34% Class_I/pararetrovirus:PARA-PROT 0.34% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-RH
pair_completeness	0.274678111587983
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00336700336700337
satellite_probability	1.3492571833667e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	99
S1	98
S3	100

comparative analysis - number of edges between species:

	S2	S1	S3
S2	57.0	73.5	65.5
S1	73.5	74.0	70.0
S3	65.5	70.0	70.0

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	0.918	1.070	1.010
S1	1.070	0.968	0.969
S3	1.010	0.969	1.030

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

pararetrovirus PARA-PROT pararetrovirus PARA-PROT 1 0.0034

TatII Ty3-RH TatII Ty3-RH 1 0.0034

clusters with similarity:

Cluster	Number of similarity hits

3	3
14	1
79	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

14	33	0.0183
3	29	0.0178
204	4	0.0296
1660	4	0.0452
9270	2	0.0233
11900	2	0.0233
20900	2	0.0234
9	1	0.000763
37	1	0.000831
39	1	0.000884
54	1	0.00325
56	1	0.000964
74	1	0.000962
124	1	0.00458
4060	1	0.0115
5190	1	0.0116
10100	1	0.0116
11100	1	0.0116
13800	1	0.0116
19200	1	0.0117
20600	1	0.0117
22300	1	0.0117
24200	1	0.0117
30800	1	0.0117
39500	1	0.0117
49500	1	0.0117
52500	1	0.0117

CL148 ----> CL14

No. of shared pairs: :33

CL148 ----> CL3

No. of shared pairs: :29