Cluster no. 93

Cluster no. 93

Go back to cluster table

Cluster is part of supercluster: 18

Cluster characteristics:

size	1639
size_real	1639
ecount	9040
supercluster	18
annotations_summary	12.32% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG 0.06% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
pair_completeness	0.553554502369668
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00061012812690665
satellite_probability	1.46614129999921e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	517
S1	573
S3	549

comparative analysis - number of edges between species:

	S2	S1	S3
S2	958	974	964
S1	974	1050	1040
S3	964	1040	1070

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	1.030	0.992	0.977
S1	0.992	1.010	0.998
S3	0.977	0.998	1.020

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

SIRE Ty1-GAG SIRE Ty1-GAG 202 0.12325

Athila Ty3-RT Athila Ty3-RT 1 0.00061

clusters with similarity:

Cluster	Number of similarity hits

64	13
51	2

clusters connected through mates:

Cluster	Number of shared read pairs	k

64	113	0.208
51	27	0.0474
99	10	0.0313
24	5	0.00373
621	5	0.0202
1780	5	0.0208
2310	5	0.021
4260	4	0.0168
295	3	0.0123
769	3	0.0124
785	3	0.0124
4820	3	0.0126
5760	3	0.0126
7670	3	0.0126
9	2	0.00137
636	2	0.00835
3640	2	0.00839
5660	2	0.00842
13900	2	0.00844
14100	2	0.00844
15500	2	0.00846
28200	2	0.00846
35600	2	0.00846
36400	2	0.00846
38300	2	0.00846
5	1	0.000419
6	1	6e-04
10	1	0.00068
12	1	0.000516
13	1	0.000606
17	1	0.000687
25	1	0.000908
36	1	0.00137
38	1	0.000854
39	1	0.00078
42	1	8e-04
61	1	0.00257
65	1	0.00243
69	1	0.00197
74	1	0.00084
75	1	0.00152
81	1	0.00282
83	1	0.00221
84	1	0.00188
100	1	0.00291
108	1	0.00325
125	1	0.00282
152	1	0.00355
231	1	0.0037
385	1	0.00395
928	1	0.00414
3180	1	0.00419
4760	1	0.0042
4940	1	0.0042
5030	1	0.00422
5520	1	0.00421
6930	1	0.00423
7510	1	0.00421
9290	1	0.00422
10200	1	0.00422
10300	1	0.00422
10500	1	0.00424
10900	1	0.00422
14100	1	0.00422
20100	1	0.00423
20900	1	0.00423
25600	1	0.00423
27500	1	0.00423
29700	1	0.00423
33800	1	0.00423
41400	1	0.00423
43200	1	0.00423
44500	1	0.00423
44600	1	0.00423
50000	1	0.00423
51000	1	0.00423
52300	1	0.00423

CL93 ----> CL64

No. of shared pairs: :113

CL93 ----> CL51

No. of shared pairs: :27

CL93 ----> CL99

No. of shared pairs: :10