Cluster no. 141

Cluster no. 141

Go back to cluster table

Cluster is part of supercluster: 84

Cluster characteristics:

size	343
size_real	343
ecount	1274
supercluster	84
annotations_summary	0.29% Class_I/LINE:LINE-ENDO
pair_completeness	0.417355371900826
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00291545189504373
satellite_probability	5.57078696969618e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	113
S1	120
S3	110

comparative analysis - number of edges between species:

	S2	S1	S3
S2	156	138	134
S1	138	158	142
S3	134	142	135

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	1.090	0.939	0.971
S1	0.939	1.050	1.010
S3	0.971	1.010	1.020

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

LINE LINE-ENDO LINE LINE-ENDO 1 0.0029

clusters with similarity:

Cluster	Number of similarity hits

11

4

clusters connected through mates:

Cluster	Number of shared read pairs	k

11	36	0.0276
76	18	0.04
32	15	0.0125
387	5	0.0649
3	3	0.00186
455	3	0.0392
3710	3	0.0408
4250	3	0.0417
7510	3	0.0414
648	2	0.0248
1930	2	0.0267
4120	2	0.0274
14500	2	0.0278
43000	2	0.028
48700	2	0.028
5	1	0.00045
9	1	0.000772
16	1	0.00058
24	1	0.000851
68	1	0.00144
74	1	0.000975
770	1	0.0128
2450	1	0.0135
3350	1	0.0138
3460	1	0.0138
3540	1	0.0136
5640	1	0.0138
13800	1	0.0141
18000	1	0.014
20800	1	0.014
33800	1	0.014
41700	1	0.014
44400	1	0.014
45200	1	0.014
47300	1	0.014

CL141 ----> CL11

No. of shared pairs: :36

CL141 ----> CL76

No. of shared pairs: :18

CL141 ----> CL32

No. of shared pairs: :15