Cluster no. 175

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Cluster is part of supercluster: 117

Cluster characteristics:

size 194
size_real 194
ecount 320
supercluster 117
annotations_summary 17.53% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.52% Class_I/LTR/Ty1_copia/Angela:Ty1-RT
pair_completeness 0.154761904761905
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00515463917525773
satellite_probability 7.34185081690782e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 72
S1 63
S3 59
comparative analysis - number of edges between species:
S2 S1 S3
S2 43.0 38.5 33.5
S1 38.5 38.0 33.0
S3 33.5 33.0 29.0
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.040 0.978 0.976
S1 0.978 1.010 1.010
S3 0.976 1.010 1.020

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Angela Ty1-RT Angela Ty1-RT 1 0.0052
Tekay Ty3-CHDII Tekay Ty3-CHDII 34 0.1753

clusters connected through mates:

Cluster Number of shared
read pairs		 k
246 9 0.0849
153 3 0.0182
218 3 0.0247
863 3 0.0382
5460 2 0.0274
14400 2 0.0276
22 1 0.000956
35 1 0.000564
191 1 0.00735
1000 1 0.0129
4880 1 0.0136
7310 1 0.0139
7510 1 0.0137
8030 1 0.0138
8150 1 0.014
27100 1 0.0139
43400 1 0.0139
44800 1 0.0139
50000 1 0.0139