Cluster no. 119

Cluster no. 119

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Cluster is part of supercluster: 63

Cluster characteristics:

size	611
size_real	611
ecount	2754
supercluster	63
annotations_summary	0.49% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG 0.16% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
pair_completeness	0.34878587196468
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0016366612111293
satellite_probability	9.19560910382493e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	204
S1	189
S3	218

comparative analysis - number of edges between species:

	S2	S1	S3
S2	288	283	308
S1	283	281	324
S3	308	324	357

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	1.030	1.000	0.976
S1	1.000	0.983	1.020
S3	0.976	1.020	1.010

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Athila Ty3-GAG Athila Ty3-GAG 3 0.0049

Tekay Ty3-RH Tekay Ty3-RH 1 0.0016

clusters with similarity:

Cluster	Number of similarity hits

4	119
33	3

clusters connected through mates:

Cluster	Number of shared read pairs	k

4	114	0.0474
33	31	0.0306
2630	4	0.0265
3660	4	0.0268
12	3	0.00162
18	3	0.00149
9240	3	0.0201
21	2	0.00213
2370	2	0.0133
35200	2	0.0135
44700	2	0.0135
9	1	0.000728
10	1	0.000724
14	1	0.000535
16	1	0.000555
19	1	0.00218
23	1	0.00107
24	1	0.000799
37	1	0.00079
44	1	0.00103
55	1	0.00218
56	1	0.000909
60	1	0.00178
74	1	0.000907
80	1	0.00112
84	1	0.00225
150	1	0.00557
1550	1	0.00658
5300	1	0.00669
7580	1	0.00669
8110	1	0.00671
9230	1	0.00671
11200	1	0.00676
12200	1	0.00676
13800	1	0.00671
20400	1	0.00673

CL119 ----> CL4

No. of shared pairs: :114

CL119 ----> CL33

No. of shared pairs: :31