Cluster no. 87

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Cluster is part of supercluster: 22

Cluster characteristics:

size 1952
size_real 1952
ecount 59703
supercluster 22
annotations_summary 7.07% 45S_rDNA/25S_rDNA
0.05% organelle/mitochondria
0.05% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
pair_completeness 0.885990338164251
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.44672131147541
satellite_probability 1.17999699205318e-06
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 591
S1 722
S3 639
comparative analysis - number of edges between species:
S2 S1 S3
S2 5370 6630 5930
S1 6630 8020 7230
S3 5930 7230 6730
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.997 1.010 0.993
S1 1.010 1.000 0.992
S3 0.993 0.992 1.020

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
25S_rDNA 25S_rDNA 138 0.07070
mitochondria mitochondria 1 0.00051
Tork Ty1-RT Tork Ty1-RT 1 0.00051

clusters with similarity:

Cluster Number of similarity hits
82 194

clusters connected through mates:

Cluster Number of shared
read pairs		 k
82 79 0.709
26600 2 0.0333
7 1 0.000454
15 1 0.00264
23 1 0.00118
37 1 0.000849
58 1 0.00257
76 1 0.00228
77 1 0.00452
222 1 0.0125
252 1 0.0126
1060 1 0.0159
3320 1 0.0161
41300 1 0.0167
49500 1 0.0167

CL87 ----> CL82

image

No. of shared pairs: :79