Cluster no. 106

Cluster no. 106

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Cluster is part of supercluster: 51

Cluster characteristics:

size	909
size_real	909
ecount	4690
supercluster	51
annotations_summary	3.41% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII 0.44% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-INT 0.33% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT 0.11% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-INT 0.11% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT 0.11% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
pair_completeness	0.527731092436975
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0011001100110011
satellite_probability	1.86264069827155e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	278
S1	326
S3	305

comparative analysis - number of edges between species:

	S2	S1	S3
S2	484	541	479
S1	541	554	560
S3	479	560	492

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	1.000	1.020	0.976
S1	1.020	0.949	1.040
S3	0.976	1.040	0.984

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Tekay Ty3-CHDII Tekay Ty3-CHDII 31 0.0341

CRM Ty3-INT CRM Ty3-INT 1 0.0011

Chlamyvir Ty3-INT Chlamyvir Ty3-INT 1 0.0011

Galadriel Ty3-INT Galadriel Ty3-INT 4 0.0044

Reina Ty3-INT Reina Ty3-INT 1 0.0011

Tekay Ty3-INT Tekay Ty3-INT 3 0.0033

clusters with similarity:

Cluster	Number of similarity hits

13	17
11	9
6	4
68	3
40	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

13	33	0.0212
6	31	0.0197
68	17	0.0222
118	14	0.06
2260	5	0.0346
40	4	0.00527
2960	4	0.0279
1270	3	0.0205
1360	3	0.0209
2200	3	0.0208
2880	3	0.0208
3520	3	0.0211
1150	2	0.0137
1610	2	0.0138
2820	2	0.0139
7860	2	0.0141
15700	2	0.0141
33900	2	0.0141
43400	2	0.0141
2	1	0.000429
5	1	0.000436
9	1	0.000732
10	1	0.000727
11	1	0.000728
20	1	0.00241
22	1	0.000896
28	1	0.00071
45	1	0.00173
48	1	0.00153
65	1	0.00315
80	1	0.00113
94	1	0.00559
99	1	0.00446
186	1	0.00595
402	1	0.00673
407	1	0.00647
484	1	0.0068
700	1	0.00678
1460	1	0.00694
1820	1	0.0069
1870	1	0.00694
1880	1	0.00699
2020	1	0.00704
2040	1	0.00694
2620	1	0.00699
3020	1	0.00697
3020	1	0.00702
3050	1	0.00697
3280	1	0.00697
3880	1	0.00699
5070	1	0.00704
5130	1	0.00699
5800	1	0.00702
5840	1	0.00707
6040	1	0.00707
6430	1	0.00707
6430	1	0.00707
7740	1	0.00702
8240	1	0.00704
8460	1	0.00704
8660	1	0.00704
8950	1	0.00704
9350	1	0.00704
10400	1	0.00709
11500	1	0.00704
13900	1	0.00704
14300	1	0.00704
17500	1	0.00707
18100	1	0.00707
23600	1	0.00707
28300	1	0.00707
28800	1	0.00707
30000	1	0.00707
31500	1	0.00707
33900	1	0.00707
35000	1	0.00707
35900	1	0.00707
36500	1	0.00707
38700	1	0.00707
40500	1	0.00707
44700	1	0.00707
45600	1	0.00707
47000	1	0.00707

CL106 ----> CL13

No. of shared pairs: :33

CL106 ----> CL6

No. of shared pairs: :31

CL106 ----> CL68

No. of shared pairs: :17

CL106 ----> CL118

No. of shared pairs: :14