Cluster no. 211

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Cluster is part of supercluster: 153

Cluster characteristics:

size 123
size_real 123
ecount 999
supercluster 153
annotations_summary 46.34% 5S_rDNA/5S_rDNA
pair_completeness 0.732394366197183
pbs_score 0.0
TR_score 0.436527293844367
TR_monomer_length 342.0
loop_index 0.764227642276423
satellite_probability 0.0311496539821124
consensus 
ACGTTATTGAAACCGTTCTGCGCGTTCGTAACGCTGCATTAGTAATCTTCCAATCCACTTTCGTACGGGTGCGATCATAC
CAGCACTAAAGCACCGGATCCCATCAGAACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTC
CTGGGAAGTCCTCGTGTTGCACTCCTTTTTGCTTCTTCTCGTTCGCAGTCCCCTTTTAATTTTAATTTCTTTTTTTTTCA
CTTCGATCCGATTTTCTATTCGATTCCTCAACGTTGTCTTCTTTCCGTTCCTTTTTTCCGAAATTATCCGTCTTTGTTTT
TCATTTTTATCTGCGTTTTTAA

  

  

    TAREAN_annotation
    rDNA
  

  

    orientation_score
    1
  

 


 
 comparative analysis:


  





 
 Comparative analysis - species read counts:



  

    Species
    Read count
  

   

    S2
    53
  

  

    S1
    34
  

  

    S3
    36
  

 


 
 comparative analysis - number of edges between species:



  

    
    S2
    S1
    S3
  

   

    S2
    182
    131.0
    110.0
  

  

    S1
    131
     91.0
     85.5
  

  

    S3
    110
     85.5
     74.0
  

 


 
 comparative analysis - observed/expected number of edges between species



  

    
    S2
    S1
    S3
  

   

    S2
    1.020
    1.010
    0.962
  

  

    S1
    1.010
    0.961
    1.030
  

  

    S3
    0.962
    1.030
    1.020
  

 


 
 protein domains:



protein domains:


  





 
 Reads annotation summary










	

	 
	
 
		   
		cl_string  
		domain  
		Freq  
		proportion 
	
 

 
5S_rDNA 

5S_rDNA



57

0.46


 
	


 

 


 
 clusters connected through mates:



  

    
      




 

    Cluster
    Number of shared
 read pairs		
    k
  

      

   		
 

 

   
     

       




  

    227
    1
    0.0156