Cluster no. 140

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Cluster is part of supercluster: 83

Cluster characteristics:

size 345
size_real 345
ecount 979
supercluster 83
annotations_summary 8.41% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
pair_completeness 0.4375
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00289855072463768
satellite_probability 4.69379822868744e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 116
S1 125
S3 104
comparative analysis - number of edges between species:
S2 S1 S3
S2 142 118.0 99.0
S1 118 130.0 98.5
S3 99 98.5 76.0
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.080 0.929 0.987
S1 0.929 1.060 1.020
S3 0.987 1.020 0.995

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tekay Ty3-CHDII Tekay Ty3-CHDII 29 0.084

clusters connected through mates:

Cluster Number of shared
read pairs		 k
116 7 0.0312
857 3 0.0411
843 2 0.0276
1140 2 0.0274
16800 2 0.0292
10 1 0.000768
22 1 0.000959
36 1 0.00179
68 1 0.00144
70 1 0.00264
90 1 0.00213
281 1 0.0109
1720 1 0.0142
6330 1 0.0146
6340 1 0.0144
8560 1 0.0145
9950 1 0.0147
21600 1 0.0146
36900 1 0.0146
37400 1 0.0146
39600 1 0.0146
50300 1 0.0146