Cluster no. 5

Cluster no. 5

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Cluster is part of supercluster: 1

Cluster characteristics:

size	11129
size_real	11129
ecount	2809354
supercluster	1
annotations_summary	0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-INT 0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT 0.01% organelle/plastid 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-CHDII 0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT 0.01% Class_II/Subclass_2/Helitron:Helitron-HEL1
pair_completeness	0.442327630896838
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00575074130649654
satellite_probability	9.71787494816826e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	3620
S1	3790
S3	3720

comparative analysis - number of edges between species:

	S2	S1	S3
S2	288000	310000	302000
S1	310000	333000	324000
S3	302000	324000	317000

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	1	1.000	1.000
S1	1	1.000	0.998
S3	1	0.998	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 1 0.00009

Helitron Helitron-HEL1 Helitron Helitron-HEL1 1 0.00009

Ale Ty1-INT Ale Ty1-INT 3 0.00027

SIRE Ty1-INT SIRE Ty1-INT 1 0.00009

Tcn1 Ty3-CHDII Tcn1 Ty3-CHDII 1 0.00009

Athila Ty3-GAG Athila Ty3-GAG 2 0.00018

Reina Ty3-RT Reina Ty3-RT 1 0.00009

clusters with similarity:

Cluster	Number of similarity hits

7	38200
35	32400
126	78
26	73
37	5
487	5
80	2
53	1
86	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

7	1890	0.44
35	1660	0.431
18	161	0.0401
26	56	0.0169
30	54	0.0167
126	38	0.0172
4	14	0.00317
37	14	0.00428
23	9	0.00306
39	9	0.00281
42	8	0.00253
12	6	0.00156
13	5	0.0014
22	5	0.0016
74	5	0.00161
9	4	0.00118
24	4	0.00123
40	4	0.00144
182	4	0.00183
27	3	0.000896
46	3	0.0011
64	3	0.00122
1	2	0.000482
2	2	0.000461
8	2	0.000734
11	2	0.000591
16	2	0.000525
25	2	0.000663
34	2	0.000824
36	2	0.000756
38	2	0.000648
48	2	0.000751
67	2	0.000792
80	2	0.000691
88	2	0.000836
888	2	0.000928
42800	2	0.000929
10	1	0.000295
17	1	0.000297
21	1	0.00034
31	1	0.000298
33	1	0.000331
49	1	0.000367
50	1	0.000364
52	1	0.000429
59	1	0.00039
69	1	0.000413
70	1	0.000406
72	1	0.000401
75	1	0.000388
77	1	0.000432
83	1	0.000422
84	1	0.000408
86	1	0.000426
93	1	0.000419
96	1	0.000409
99	1	0.000447
106	1	0.000436
111	1	0.000442
139	1	0.000442
141	1	0.00045
149	1	0.000459
168	1	0.000463
240	1	0.000459
386	1	0.000464
726	1	0.000463
1340	1	0.000464
1360	1	0.000463
1610	1	0.000464
1840	1	0.000464
2790	1	0.000464
4560	1	0.000464
5230	1	0.000464
6680	1	0.000465
7980	1	0.000464
9970	1	0.000464
11300	1	0.000464
13900	1	0.000464
14200	1	0.000465
14300	1	0.000464
19200	1	0.000465
25400	1	0.000465
46700	1	0.000465
49500	1	0.000465
51400	1	0.000465

CL5 ----> CL7

No. of shared pairs: :1891

CL5 ----> CL35

No. of shared pairs: :1660

CL5 ----> CL18

No. of shared pairs: :161

CL5 ----> CL26

No. of shared pairs: :56

CL5 ----> CL30

No. of shared pairs: :54

CL5 ----> CL126

No. of shared pairs: :38

CL5 ----> CL4

No. of shared pairs: :14

CL5 ----> CL37

No. of shared pairs: :14