Cluster no. 76

Cluster no. 76

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Cluster is part of supercluster: 6

Cluster characteristics:

size	2552
size_real	2552
ecount	14468
supercluster	6
annotations_summary	0.20% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT
pair_completeness	0.541062801932367
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000391849529780564
satellite_probability	1.65508917325132e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	784
S1	921
S3	847

comparative analysis - number of edges between species:

	S2	S1	S3
S2	1370	1550	1390
S1	1550	2050	1750
S3	1390	1750	1660

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	1.070	0.973	0.971
S1	0.973	1.030	0.985
S3	0.971	0.985	1.040

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

TatIV_Ogre Ty3-INT TatIV_Ogre Ty3-INT 5 0.002

clusters with similarity:

Cluster	Number of similarity hits

32	76
11	74
3	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

11	246	0.152
32	207	0.137
141	18	0.04
3	15	0.00779
24	7	0.00472
1320	7	0.0182
4	4	0.00152
40	3	0.003
95	3	0.00508
543	3	0.00766
1100	3	0.00775
6	2	0.0011
12	2	0.000961
18	2	0.000892
33	2	0.00161
37	2	0.00133
42	2	0.00143
74	2	0.0015
96	2	0.00296
355	2	0.00504
648	2	0.00513
770	2	0.00516
1250	2	0.00519
1300	2	0.00519
3460	2	0.00524
3760	2	0.00523
3800	2	0.00523
5510	2	0.00524
11000	2	0.00524
14500	2	0.00524
39200	2	0.00525
52400	2	0.00525
8	1	0.00105
9	1	0.000623
10	1	0.000619
13	1	0.000557
16	1	0.000491
19	1	0.00145
25	1	0.000803
29	1	0.00078
30	1	0.000684
35	1	0.00048
39	1	0.000701
53	1	0.00123
62	1	0.00232
72	1	0.00139
80	1	0.00089
87	1	0.00228
161	1	0.00228
520	1	0.00254
649	1	0.00258
930	1	0.00258
973	1	0.00261
1190	1	0.00261
1480	1	0.00261
1850	1	0.00262
1930	1	0.0026
2020	1	0.00261
2860	1	0.00261
2970	1	0.00262
3040	1	0.00261
3190	1	0.00262
3210	1	0.00261
3540	1	0.00261
3710	1	0.00261
4340	1	0.00261
6250	1	0.00262
7450	1	0.00262
8990	1	0.00262
9480	1	0.00262
10200	1	0.00262
10500	1	0.00262
11000	1	0.00262
13800	1	0.00262
17400	1	0.00262
17800	1	0.00262
18700	1	0.00262
19500	1	0.00262
23500	1	0.00262
26200	1	0.00262
28200	1	0.00262
29400	1	0.00262
31000	1	0.00262
32600	1	0.00262
32600	1	0.00262
34400	1	0.00262
36900	1	0.00262
39200	1	0.00262
41100	1	0.00262
44700	1	0.00262
45100	1	0.00262
46000	1	0.00262
48100	1	0.00262
50900	1	0.00262
51800	1	0.00262
52000	1	0.00262
52200	1	0.00262

CL76 ----> CL11

No. of shared pairs: :246

CL76 ----> CL32

No. of shared pairs: :207

CL76 ----> CL141

No. of shared pairs: :18

CL76 ----> CL3

No. of shared pairs: :15