Cluster no. 219

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Cluster is part of supercluster: 161

Cluster characteristics:

size 115
size_real 115
ecount 452
supercluster 161
annotations_summary 26.96% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
6.96% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
pair_completeness 0.769230769230769
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00869565217391304
satellite_probability 5.78030605032073e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 43
S1 26
S3 46
comparative analysis - number of edges between species:
S2 S1 S3
S2 60.0 38.5 62
S1 38.5 25.0 50
S3 62.0 50.0 66
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.050 0.955 0.981
S1 0.955 0.877 1.120
S3 0.981 1.120 0.942

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tekay Ty3-GAG Tekay Ty3-GAG 31 0.27
Tekay Ty3-PROT Tekay Ty3-PROT 8 0.07

clusters connected through mates:

Cluster Number of shared
read pairs		 k
17 7 0.0057
1390 3 0.273
315 1 0.0541
5640 1 0.118